SRR2936105.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936105.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	529211
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG	1890	0.3571354336927993	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC	1675	0.3165089161034068	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC	1389	0.2624661996821684	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	807	0.15249116137041746	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGTA	30	2.1632732E-6	45.000004	26
CGGGTAC	20	7.029834E-4	45.0	6
GGTAACG	20	7.029834E-4	45.0	1
CGATTAA	25	3.887943E-5	45.0	24
CGTAGCG	25	3.887943E-5	45.0	30
CTACGCG	20	7.029834E-4	45.0	25
ACGTGCC	20	7.029834E-4	45.0	43
CCGAGCC	25	3.887943E-5	45.0	45
ACTACGG	35	1.2102646E-7	45.0	2
GCGATAT	20	7.029834E-4	45.0	9
CGTAATA	20	7.029834E-4	45.0	29
ACGTATG	20	7.029834E-4	45.0	1
TTTGACG	20	7.029834E-4	45.0	1
GCTAACG	20	7.029834E-4	45.0	1
TGCGTAA	25	3.887943E-5	45.0	1
CTACGAA	110	0.0	42.954544	11
TACGAAT	110	0.0	42.954544	12
GCTACGA	110	0.0	42.954544	10
GCGAGAC	85	0.0	42.35294	21
GACACGA	85	0.0	42.35294	25