SRR2936099.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936099.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	311409
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG	1153	0.3702526259677787	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC	819	0.26299817924337443	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	776	0.24918997203035234	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	561	0.18014893596524187	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	388	0.12459498601517617	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	312	0.10018978256890457	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGT	20	7.025357E-4	45.0	11
TTTACGG	20	7.025357E-4	45.0	2
GCGCGAC	25	3.884235E-5	45.0	9
CGTTGAT	20	7.025357E-4	45.0	25
AAGACGT	20	7.025357E-4	45.0	18
CGATTGG	20	7.025357E-4	45.0	2
CGCGACC	25	3.884235E-5	45.0	10
CTACGAG	20	7.025357E-4	45.0	34
TCTCGTC	20	7.025357E-4	45.0	12
AATCTCG	20	7.025357E-4	45.0	10
CGGTGTA	20	7.025357E-4	45.0	32
CGCAGCG	20	7.025357E-4	45.0	15
ATGCGAC	20	7.025357E-4	45.0	11
CGGTCAA	25	3.884235E-5	45.0	22
GACGACC	20	7.025357E-4	45.0	24
ATTGCGG	20	7.025357E-4	45.0	2
CAATCAC	20	7.025357E-4	45.0	42
GGCCTAT	20	7.025357E-4	45.0	8
AGTACGG	45	3.8198777E-10	45.0	2
AGGCGAT	30	2.1603864E-6	44.999996	7