SRR2936098.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936098.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	749271
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	3247	0.43335455395978223	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	3079	0.41093275997603007	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	2233	0.29802301170070644	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1324	0.17670509068147572	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	824	0.10997356096792749	TruSeq Adapter, Index 23 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGATT	20	7.031712E-4	45.0	42
TACGCTA	20	7.031712E-4	45.0	1
CCGCGAT	20	7.031712E-4	45.0	41
ACATCGC	20	7.031712E-4	45.0	20
TACCGTA	20	7.031712E-4	45.0	18
TACGGGT	60	3.6379788E-12	41.249996	4
GGCGATA	195	0.0	40.384617	8
GTTACGG	85	0.0	39.705883	2
TTGTCGC	40	3.45608E-7	39.375	38
TAGACGG	110	0.0	38.863632	2
TTACGGG	210	0.0	38.57143	3
CGATCAT	35	6.24538E-6	38.571426	10
GCGTAAC	35	6.24538E-6	38.571426	32
CGAATAT	125	0.0	37.800003	14
GCTACGA	125	0.0	37.800003	10
TAACGGG	275	0.0	37.636364	3
CGTGCGG	60	1.546141E-10	37.499996	2
ACACGAC	170	0.0	37.058823	26
CACGACC	170	0.0	37.058823	27
TCAAGCG	170	0.0	37.058823	17