SRR2936096.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936096.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468982
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG	1931	0.4117428813899041	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	1693	0.3609946650404493	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC	1585	0.3379660626633858	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	726	0.15480338264581583	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	647	0.13795838646259345	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	476	0.10149643269890954	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGT	20	7.0290104E-4	45.0	17
TCCGCCG	20	7.0290104E-4	45.0	13
AAGCGAT	25	3.887261E-5	45.0	43
AAGCGAC	20	7.0290104E-4	45.0	15
ATATCCG	20	7.0290104E-4	45.0	1
TCAATCA	20	7.0290104E-4	45.0	14
TCTACGG	50	2.1827873E-11	45.0	2
CTCGGTA	20	7.0290104E-4	45.0	39
GCTTACG	20	7.0290104E-4	45.0	9
GTCACGC	20	7.0290104E-4	45.0	13
AACGCCG	35	1.2098644E-7	45.0	13
CATACGT	20	7.0290104E-4	45.0	36
ACGTCGC	20	7.0290104E-4	45.0	20
CGTGTCT	40	6.7993824E-9	45.0	18
CTCGAAC	20	7.0290104E-4	45.0	18
CACCGTG	20	7.0290104E-4	45.0	41
TAGTGCG	20	7.0290104E-4	45.0	1
AGCACCG	30	2.1627438E-6	44.999996	39
TCCATCG	30	2.1627438E-6	44.999996	30
GCGATCA	75	0.0	42.000004	9