FastQCFastQC Report
Sat 14 Jan 2017
SRR2936096.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936096.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468982
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG19310.4117428813899041No Hit
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC16930.3609946650404493No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC15850.3379660626633858No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC7260.15480338264581583No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6470.13795838646259345No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG4760.10149643269890954No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACGT207.0290104E-445.017
TCCGCCG207.0290104E-445.013
AAGCGAT253.887261E-545.043
AAGCGAC207.0290104E-445.015
ATATCCG207.0290104E-445.01
TCAATCA207.0290104E-445.014
TCTACGG502.1827873E-1145.02
CTCGGTA207.0290104E-445.039
GCTTACG207.0290104E-445.09
GTCACGC207.0290104E-445.013
AACGCCG351.2098644E-745.013
CATACGT207.0290104E-445.036
ACGTCGC207.0290104E-445.020
CGTGTCT406.7993824E-945.018
CTCGAAC207.0290104E-445.018
CACCGTG207.0290104E-445.041
TAGTGCG207.0290104E-445.01
AGCACCG302.1627438E-644.99999639
TCCATCG302.1627438E-644.99999630
GCGATCA750.042.0000049