Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936096.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 468982 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG | 1931 | 0.4117428813899041 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC | 1693 | 0.3609946650404493 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC | 1585 | 0.3379660626633858 | No Hit |
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC | 726 | 0.15480338264581583 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 647 | 0.13795838646259345 | No Hit |
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 476 | 0.10149643269890954 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGACGT | 20 | 7.0290104E-4 | 45.0 | 17 |
TCCGCCG | 20 | 7.0290104E-4 | 45.0 | 13 |
AAGCGAT | 25 | 3.887261E-5 | 45.0 | 43 |
AAGCGAC | 20 | 7.0290104E-4 | 45.0 | 15 |
ATATCCG | 20 | 7.0290104E-4 | 45.0 | 1 |
TCAATCA | 20 | 7.0290104E-4 | 45.0 | 14 |
TCTACGG | 50 | 2.1827873E-11 | 45.0 | 2 |
CTCGGTA | 20 | 7.0290104E-4 | 45.0 | 39 |
GCTTACG | 20 | 7.0290104E-4 | 45.0 | 9 |
GTCACGC | 20 | 7.0290104E-4 | 45.0 | 13 |
AACGCCG | 35 | 1.2098644E-7 | 45.0 | 13 |
CATACGT | 20 | 7.0290104E-4 | 45.0 | 36 |
ACGTCGC | 20 | 7.0290104E-4 | 45.0 | 20 |
CGTGTCT | 40 | 6.7993824E-9 | 45.0 | 18 |
CTCGAAC | 20 | 7.0290104E-4 | 45.0 | 18 |
CACCGTG | 20 | 7.0290104E-4 | 45.0 | 41 |
TAGTGCG | 20 | 7.0290104E-4 | 45.0 | 1 |
AGCACCG | 30 | 2.1627438E-6 | 44.999996 | 39 |
TCCATCG | 30 | 2.1627438E-6 | 44.999996 | 30 |
GCGATCA | 75 | 0.0 | 42.000004 | 9 |