FastQCFastQC Report
Sat 14 Jan 2017
SRR2936095.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936095.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497763
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8390.1685541110930302No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTACGC207.0294284E-445.08
CGATTAT207.0294284E-445.012
CGCGAAG207.0294284E-445.02
ATCCGTT207.0294284E-445.011
TTAACGG406.8012014E-945.02
CGTACAC207.0294284E-445.025
CCGAACT253.887608E-545.013
AATACGG351.2100645E-745.02
GCGTACA207.0294284E-445.024
CATACGA1400.043.39285718
TGCTCGG700.041.7857132
TATGCGG603.6379788E-1241.2499962
TTACGGG1600.040.781253
GCGAGAC501.0786607E-940.521
ACATACG1500.040.517
GTATGCG403.4529512E-739.3751
CTACGAA403.4529512E-739.37511
GCTACGA403.4529512E-739.37510
GCGATGA1150.039.1304329
AGTACGG750.039.02
Produced by FastQC (version 0.11.5)