SRR2936091.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936091.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	625808
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5057	0.8080753202260118	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1752	0.2799580702068366	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	1733	0.27692199524454786	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	1148	0.1834428450898678	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	958	0.1530820954669803	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGC	943	0.15068519418096285	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	712	0.11377291437629433	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	671	0.10722138419451334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGTC	30	2.1639098E-6	45.000004	8
CGCATAG	20	7.03082E-4	45.000004	2
GTTGTCG	20	7.03082E-4	45.000004	37
TCTCGTA	40	6.8066583E-9	45.000004	28
GTCAACG	30	2.1639098E-6	45.000004	1
AGTTACG	20	7.03082E-4	45.000004	1
TTCGAAG	40	6.8066583E-9	45.000004	1
TCGAATT	20	7.03082E-4	45.000004	12
CGTATGG	50	2.1827873E-11	45.0	2
CGATAGC	35	1.2107375E-7	45.0	10
GCGTATG	25	3.8887625E-5	45.0	1
CGGTTTT	650	0.0	42.923077	1
CGTTATT	495	0.0	42.727272	1
GCTACGA	75	0.0	42.0	10
CGTTTTT	2170	0.0	41.785713	1
CGTTTTA	355	0.0	41.19718	1
TGCGATG	50	1.0804797E-9	40.5	1
TCGTACG	45	1.925946E-8	40.000004	30
CACGTGA	90	0.0	40.000004	43
AGGCGAT	120	0.0	39.375004	7