SRR2936090.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936090.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527244
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCG	635	0.12043759625524424	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	546	0.10355736622891867	No Hit
GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	538	0.10204004218160852	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	20	7.0298096E-4	45.0	40
CGGAATC	20	7.0298096E-4	45.0	28
CGGGTAT	45	3.8380676E-10	45.0	6
CGAACGT	20	7.0298096E-4	45.0	38
CGACGGT	40	6.8030204E-9	45.0	28
GCGAATG	40	6.8030204E-9	45.0	1
CGTTGAA	20	7.0298096E-4	45.0	32
TACGGGT	35	1.2102464E-7	45.0	4
CACTCGC	20	7.0298096E-4	45.0	22
TGCGACG	20	7.0298096E-4	45.0	1
TCGACCT	20	7.0298096E-4	45.0	23
TATAACG	25	3.8879232E-5	45.0	1
TACGTAG	20	7.0298096E-4	45.0	1
TTTAACG	30	2.1632586E-6	44.999996	1
AAACGAG	30	2.1632586E-6	44.999996	37
TTAACGG	60	3.6379788E-12	41.249996	2
CGGGTTA	55	6.002665E-11	40.909092	6
AATGGGC	145	0.0	40.344826	4
ACCGGGT	45	1.9248546E-8	40.0	4
TACGAAT	40	3.4534787E-7	39.375	12