SRR2936087.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936087.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	612412
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	2534	0.41377373402219425	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG	2393	0.39075001796176434	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2296	0.3749110076223196	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	1767	0.28853125020411097	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	768	0.12540577258446928	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	675	0.1102199173105687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGCA	55	1.8189894E-12	45.000004	22
GCGTCAT	55	1.8189894E-12	45.000004	37
ATTACGA	20	7.0307025E-4	45.0	10
CTCGCGA	20	7.0307025E-4	45.0	32
TAGTGCG	20	7.0307025E-4	45.0	1
TATACGG	20	7.0307025E-4	45.0	2
TCGACCG	20	7.0307025E-4	45.0	24
AGAATCG	20	7.0307025E-4	45.0	32
TAAGACG	20	7.0307025E-4	45.0	1
ATCGACC	25	3.8886636E-5	45.0	23
ATCCGGT	30	2.1638352E-6	44.999996	11
GTATCCG	30	2.1638352E-6	44.999996	9
TCGTACC	30	2.1638352E-6	44.999996	45
CGGGTAT	50	1.0804797E-9	40.5	6
GCGAGAC	145	0.0	40.34483	21
ACGGGAC	180	0.0	40.0	5
CGGTTTT	355	0.0	39.929577	1
TTACGGG	160	0.0	39.375	3
CGATGCA	40	3.4546974E-7	39.375	10
TTCGCGG	40	3.4546974E-7	39.375	2