SRR2936086.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936086.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397475
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCG	1086	0.2732247311151645	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTC	960	0.24152462419020065	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGC	867	0.21812692622177496	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	438	0.11019560978677903	No Hit
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	422	0.10617019938360904	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCGTA	30	2.1619053E-6	45.000004	35
GCGATAA	35	1.209246E-7	45.000004	9
TTCGCTA	30	2.1619053E-6	45.000004	14
CTTAACG	20	7.0277124E-4	45.0	1
GTACCAC	20	7.0277124E-4	45.0	36
CGAACCA	20	7.0277124E-4	45.0	14
ACACGAC	40	6.7957444E-9	45.0	26
CGAACAC	20	7.0277124E-4	45.0	38
CTCGTTG	20	7.0277124E-4	45.0	18
ATTAGCG	20	7.0277124E-4	45.0	1
ACGTTTC	20	7.0277124E-4	45.0	28
TCGATGG	45	3.8380676E-10	45.0	2
TAGCCGC	20	7.0277124E-4	45.0	13
CCGTCAG	25	3.886185E-5	45.0	30
GTTAACG	20	7.0277124E-4	45.0	1
CTACGTC	20	7.0277124E-4	45.0	37
GAAACCG	20	7.0277124E-4	45.0	38
TCCCGCT	20	7.0277124E-4	45.0	21
CGGTCTA	20	7.0277124E-4	45.0	31
CGCAATC	20	7.0277124E-4	45.0	20