##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936084.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 415939 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.89675889974251 31.0 31.0 34.0 30.0 34.0 2 32.046961213062495 33.0 31.0 34.0 30.0 34.0 3 31.97296718990044 33.0 31.0 34.0 30.0 34.0 4 35.713046865045115 37.0 35.0 37.0 35.0 37.0 5 31.24246343814838 37.0 35.0 37.0 0.0 37.0 6 33.4261995148327 37.0 35.0 37.0 17.0 37.0 7 29.480902247685357 35.0 32.0 37.0 0.0 37.0 8 32.5492800627015 35.0 33.0 37.0 17.0 37.0 9 36.39541134637531 39.0 35.0 39.0 32.0 39.0 10 36.80389672524096 38.0 35.0 39.0 33.0 39.0 11 36.93743794162125 39.0 37.0 39.0 33.0 39.0 12 36.85284140222485 39.0 35.0 39.0 33.0 39.0 13 36.612397490978246 39.0 35.0 39.0 33.0 39.0 14 37.827099646823214 40.0 36.0 41.0 33.0 41.0 15 37.908616407694396 40.0 36.0 41.0 33.0 41.0 16 37.972277184875665 40.0 36.0 41.0 33.0 41.0 17 37.92671761965096 40.0 36.0 41.0 33.0 41.0 18 37.85187251015173 40.0 36.0 41.0 33.0 41.0 19 37.78087892695804 40.0 36.0 41.0 33.0 41.0 20 37.717557141792426 40.0 36.0 41.0 33.0 41.0 21 37.593909203032176 39.0 36.0 41.0 33.0 41.0 22 37.585814266034205 39.0 35.0 41.0 33.0 41.0 23 37.52559630138073 39.0 35.0 41.0 33.0 41.0 24 37.49374307290252 39.0 35.0 41.0 33.0 41.0 25 37.34927717766307 39.0 35.0 41.0 32.0 41.0 26 37.19394430433309 39.0 35.0 41.0 32.0 41.0 27 37.129891642764925 39.0 35.0 41.0 32.0 41.0 28 37.04379007498696 39.0 35.0 41.0 32.0 41.0 29 37.031369984541 39.0 35.0 41.0 32.0 41.0 30 36.91618482517869 39.0 35.0 41.0 31.0 41.0 31 36.78544450027528 39.0 35.0 41.0 31.0 41.0 32 36.63197007253468 39.0 35.0 40.0 31.0 41.0 33 36.50344401462714 39.0 35.0 40.0 30.0 41.0 34 36.35892763121515 39.0 35.0 40.0 30.0 41.0 35 36.262670728159655 39.0 35.0 40.0 30.0 41.0 36 36.14918533727301 39.0 35.0 40.0 30.0 41.0 37 36.06612748503987 38.0 35.0 40.0 29.0 41.0 38 35.94101058087845 38.0 35.0 40.0 29.0 41.0 39 35.94519388660356 38.0 35.0 40.0 29.0 41.0 40 35.82180079290473 38.0 35.0 40.0 29.0 41.0 41 35.7344201914223 38.0 35.0 40.0 28.0 41.0 42 35.67693339648362 38.0 35.0 40.0 28.0 41.0 43 35.504535520833585 38.0 34.0 40.0 27.0 41.0 44 35.34008352186258 38.0 34.0 40.0 27.0 41.0 45 35.20878782706118 38.0 34.0 40.0 26.0 41.0 46 35.089664590240396 38.0 34.0 40.0 26.0 41.0 47 34.959157472610165 38.0 34.0 40.0 26.0 41.0 48 34.88051853757402 37.0 34.0 40.0 25.0 41.0 49 34.721711597133236 37.0 34.0 40.0 24.0 41.0 50 34.52351186111425 37.0 34.0 40.0 24.0 41.0 51 32.59275999605711 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 11.0 9 37.0 10 27.0 11 22.0 12 19.0 13 18.0 14 21.0 15 27.0 16 67.0 17 114.0 18 253.0 19 380.0 20 635.0 21 960.0 22 1507.0 23 2039.0 24 2853.0 25 3654.0 26 4487.0 27 5508.0 28 6251.0 29 7319.0 30 9158.0 31 11807.0 32 15188.0 33 22191.0 34 32571.0 35 38613.0 36 40461.0 37 62761.0 38 76388.0 39 70582.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.16137702884318 21.30264293562277 24.476906469458264 11.059073566075794 2 32.918288499034716 24.732472790481296 24.32231649352429 18.026922216959697 3 33.142119397315476 24.44877734475488 25.207782872007673 17.201320385921974 4 29.18360624995492 25.679486655495154 25.651117110922517 19.48578998362741 5 21.801754584205856 39.22714628827785 21.30528755418463 17.665811573331666 6 25.902115454429612 36.04975729614198 24.201144879417413 13.846982370010988 7 68.81345581924273 20.005577740966825 6.877210360173006 4.303756079617444 8 82.49959729671899 5.870331947713487 7.732143415260411 3.897927340307113 9 75.76279214019364 8.69454415190689 9.730513368546829 5.8121503393526455 10 42.1989762921967 27.2138462611104 16.50794948297707 14.079227963715834 11 33.96435535018356 25.840808387768398 23.170464899901187 17.024371362146855 12 30.71580207674683 23.680876282339476 27.339826272602473 18.26349536831122 13 25.752574295750097 26.290153123414733 27.94015468614388 20.01711789469129 14 20.961006301404773 29.660599270566117 28.441910953288822 20.936483474740285 15 20.366688384594855 26.639002353710524 34.45385020399626 18.540459057698364 16 23.351741481322982 24.324720692216886 32.96565121327887 19.35788661318126 17 22.714147988046324 24.96063124640873 28.641219024905094 23.684001740639854 18 24.341309663195805 25.06232885110557 29.00617638644128 21.59018509925734 19 26.931352914730283 27.27635542711792 25.8521081216236 19.940183536528192 20 28.900391643967023 25.897307057044422 25.681410014449234 19.520891284539317 21 25.023861672024022 28.17528531827984 26.900579171465044 19.900273838231087 22 24.51585448827833 25.163305196194635 26.820759774870833 23.500080540656203 23 23.013951565013137 27.714640848778306 27.54851071911987 21.722896867088686 24 23.887396950033537 24.889466965107864 29.82071890349306 21.40241718136554 25 23.02092374122167 26.434164625101275 27.228271453265982 23.31664018041107 26 22.463149644539225 27.83076364563073 27.583371600162526 22.122715109667524 27 22.424201625719157 28.11373783174937 27.769456578969514 21.692603963561965 28 20.44338232288869 28.583037416544254 29.12782884028668 21.845751420280376 29 22.25133973972145 26.738776599453285 28.736425293131923 22.273458367693337 30 23.576293639211517 25.66265726464698 28.79845361940092 21.962595476740578 31 24.90028585922455 26.15864345492969 26.429115807846827 22.51195487799894 32 25.274379175792603 27.166723966735507 27.203989046470756 20.354907811001134 33 25.03419972640219 26.960924558649225 26.487778255946186 21.5170974590024 34 21.30480671444611 27.059015865307174 29.361036113468565 22.275141306778156 35 23.05939092030322 26.09637470879143 27.925248654249778 22.91898571665557 36 22.838445060453576 29.14297529205004 26.974628491197027 21.04395115629936 37 23.254852274011334 28.508026417335238 26.75199969226257 21.485121616390863 38 21.974376050334303 29.11556742695443 25.588607944914997 23.321448577796264 39 22.498491365320394 27.126814268438398 27.662950576887475 22.71174378935373 40 23.82031980651009 25.441951824666596 28.50514137890412 22.232586989919195 41 20.50997862667362 26.24783922642503 27.902889606408632 25.339292540492714 42 22.906483883454065 26.54331524574517 26.334390379358513 24.215810491442255 43 23.451275307196486 25.96582671978343 26.665448539329084 23.917449433690997 44 21.499065968807926 26.958039520218108 27.102531861643175 24.44036264933079 45 22.270092489523705 26.651263767042764 26.673382395014656 24.40526134841888 46 22.529024688716373 27.830042386022953 26.472872224052086 23.16806070120859 47 21.19950281171037 27.642274468131145 27.98487278182618 23.1733499383323 48 21.902009669687143 25.678524976018117 28.537838481123433 23.881626873171307 49 21.714722591533857 25.778058801891625 28.62799593209581 23.879222674478708 50 19.625714347536537 26.849369739312735 28.312324643757858 25.21259126939287 51 20.30586215767216 25.896585797436643 27.32612234005467 26.471429704836524 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 349.0 1 686.5 2 1024.0 3 1326.0 4 1628.0 5 1388.0 6 1148.0 7 1040.5 8 933.0 9 941.0 10 949.0 11 923.0 12 897.0 13 981.0 14 1065.0 15 1107.5 16 1150.0 17 1218.5 18 1287.0 19 1405.5 20 1524.0 21 1797.0 22 2070.0 23 2212.0 24 2354.0 25 2874.5 26 3624.0 27 3853.0 28 4759.0 29 5665.0 30 6676.0 31 7687.0 32 8814.0 33 9941.0 34 10823.5 35 11706.0 36 12562.5 37 13419.0 38 15025.5 39 16632.0 40 18821.0 41 21010.0 42 22951.0 43 24892.0 44 26893.0 45 28894.0 46 30785.0 47 32676.0 48 32425.5 49 32175.0 50 31591.5 51 31008.0 52 29558.5 53 28109.0 54 25872.5 55 23636.0 56 22232.0 57 20828.0 58 20331.0 59 19834.0 60 19111.0 61 18388.0 62 16780.5 63 15173.0 64 12509.0 65 9845.0 66 8179.0 67 6513.0 68 5706.0 69 4899.0 70 3993.0 71 3087.0 72 2802.0 73 2517.0 74 2064.5 75 1289.5 76 967.0 77 748.5 78 530.0 79 396.5 80 263.0 81 213.5 82 164.0 83 135.0 84 106.0 85 79.0 86 52.0 87 45.0 88 38.0 89 29.0 90 20.0 91 17.0 92 14.0 93 11.5 94 9.0 95 6.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 415939.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.860519950818926 #Duplication Level Percentage of deduplicated Percentage of total 1 72.93123384183176 24.694894985391848 2 8.416728713029494 5.699896210163314 3 3.9035053187299282 3.965241591689476 4 2.4595130808664907 3.331215669759198 5 1.8411233423284201 3.1170696832414952 6 1.3397561240837983 2.7218903381262773 7 1.1231482255985408 2.6621268030424394 8 0.8841222956206586 2.3949472503861715 9 0.6975922030922702 2.1258751239307387 >10 6.198510013061423 44.18011835714398 >50 0.1827259664291858 3.7265218082551685 >100 0.022040875328034084 1.3802021788698806 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 485 0.11660363659094242 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.808397385193502E-4 0.0 0.0 0.054094470583426896 0.0 2 4.808397385193502E-4 0.0 0.0 0.313747929383876 0.0 3 4.808397385193502E-4 0.0 0.0 0.44453633826113925 0.0 4 4.808397385193502E-4 0.0 0.0 0.625332079944415 0.0 5 4.808397385193502E-4 0.0 0.0 1.164834266563126 0.0 6 4.808397385193502E-4 0.0 0.0 1.519213153851887 0.0 7 4.808397385193502E-4 0.0 0.0 1.8594072688543273 0.0 8 4.808397385193502E-4 0.0 0.0 2.5051750376858144 0.0 9 4.808397385193502E-4 0.0 0.0 2.781657887334441 0.0 10 4.808397385193502E-4 0.0 0.0 3.4745479505408245 0.0 11 4.808397385193502E-4 0.0 0.0 4.2388427149173316 0.0 12 4.808397385193502E-4 0.0 0.0 4.883167964533261 0.0 13 4.808397385193502E-4 0.0 0.0 5.135849247125179 0.0 14 4.808397385193502E-4 0.0 0.0 5.237787271691282 0.0 15 4.808397385193502E-4 0.0 0.0 5.441663320823486 0.0 16 4.808397385193502E-4 0.0 0.0 5.855666335688647 0.0 17 4.808397385193502E-4 0.0 0.0 6.3586247021798865 0.0 18 4.808397385193502E-4 0.0 0.0 6.912792500823438 0.0 19 4.808397385193502E-4 0.0 0.0 7.231108407723248 0.0 20 4.808397385193502E-4 0.0 0.0 7.534518282728958 0.0 21 4.808397385193502E-4 0.0 0.0 7.915102935767024 0.0 22 4.808397385193502E-4 0.0 0.0 8.3021789252751 0.0 23 4.808397385193502E-4 0.0 0.0 8.710652283147288 0.0 24 4.808397385193502E-4 0.0 0.0 9.03497868677859 0.0 25 4.808397385193502E-4 0.0 0.0 9.32324211002094 0.0 26 4.808397385193502E-4 0.0 0.0 9.593954882807335 0.0 27 4.808397385193502E-4 0.0 0.0 9.859137998600756 0.0 28 4.808397385193502E-4 0.0 0.0 10.140188825765316 0.0 29 4.808397385193502E-4 0.0 0.0 10.443598700771027 0.0 30 4.808397385193502E-4 0.0 0.0 10.779705677996052 0.0 31 4.808397385193502E-4 0.0 0.0 11.120861472475532 0.0 32 4.808397385193502E-4 0.0 0.0 11.427156385912358 0.0 33 4.808397385193502E-4 0.0 0.0 11.724315344317315 0.0 34 4.808397385193502E-4 0.0 0.0 12.044314190301943 0.0 35 4.808397385193502E-4 0.0 0.0 12.366476815109907 0.0 36 4.808397385193502E-4 0.0 0.0 12.689360699525652 0.0 37 4.808397385193502E-4 0.0 0.0 13.01609130184955 0.0 38 4.808397385193502E-4 0.0 0.0 13.367825570576455 0.0 39 4.808397385193502E-4 0.0 0.0 13.720040679041878 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTTGCG 25 3.8864975E-5 45.000004 1 CGGATGG 50 2.1827873E-11 45.000004 2 CTACGAA 25 3.8864975E-5 45.000004 11 TACGAAT 25 3.8864975E-5 45.000004 12 CGAATAT 25 3.8864975E-5 45.000004 14 CGTCGTC 25 3.8864975E-5 45.000004 37 TAATACG 20 7.028091E-4 45.0 4 CGAAAGT 20 7.028091E-4 45.0 20 CGCATCG 20 7.028091E-4 45.0 21 ACGATTG 20 7.028091E-4 45.0 17 TTGACGA 20 7.028091E-4 45.0 14 GCGATTC 20 7.028091E-4 45.0 9 AGTCGTG 20 7.028091E-4 45.0 1 GTACGAA 20 7.028091E-4 45.0 1 CGACAAT 30 2.162149E-6 44.999996 20 TCATCGA 30 2.162149E-6 44.999996 16 TCGACAA 30 2.162149E-6 44.999996 19 GGTACAT 55 6.002665E-11 40.909092 8 AGACACG 100 0.0 40.500004 24 GCGATCA 45 1.9232175E-8 40.0 9 >>END_MODULE