SRR2936083.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936083.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	175650
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCG	424	0.2413891261030458	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGC	419	0.2385425562197552	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTC	239	0.13606604042129233	No Hit
GCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC	233	0.13265015656134357	TruSeq Adapter, Index 15 (95% over 21bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	218	0.12411044691147168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	20	7.0169574E-4	45.000004	5
CTATGCG	20	7.0169574E-4	45.000004	1
CCCTAGA	20	7.0169574E-4	45.000004	23
CGCGCAG	20	7.0169574E-4	45.000004	35
AATGGTC	45	3.8016879E-10	45.000004	10
TCGATCA	20	7.0169574E-4	45.000004	17
ATACTCG	20	7.0169574E-4	45.000004	10
GTTACGG	20	7.0169574E-4	45.000004	2
CCGTACG	20	7.0169574E-4	45.000004	1
CGGGCTA	20	7.0169574E-4	45.000004	6
AGCTGTA	20	7.0169574E-4	45.000004	10
ACTCGCA	20	7.0169574E-4	45.000004	12
TCGTAGG	20	7.0169574E-4	45.000004	2
TACTCGC	20	7.0169574E-4	45.000004	11
GTTCTTC	50	2.1827873E-11	45.0	35
TAGAATC	50	2.1827873E-11	45.0	26
AAGACGC	25	3.8772778E-5	45.0	38
TACGGGA	35	1.20408E-7	45.0	4
CAAGACG	25	3.8772778E-5	45.0	37
CCACACG	25	3.8772778E-5	45.0	25