Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936083.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 175650 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCG | 424 | 0.2413891261030458 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGC | 419 | 0.2385425562197552 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTC | 239 | 0.13606604042129233 | No Hit |
GCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC | 233 | 0.13265015656134357 | TruSeq Adapter, Index 15 (95% over 21bp) |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 218 | 0.12411044691147168 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGGGCG | 20 | 7.0169574E-4 | 45.000004 | 5 |
CTATGCG | 20 | 7.0169574E-4 | 45.000004 | 1 |
CCCTAGA | 20 | 7.0169574E-4 | 45.000004 | 23 |
CGCGCAG | 20 | 7.0169574E-4 | 45.000004 | 35 |
AATGGTC | 45 | 3.8016879E-10 | 45.000004 | 10 |
TCGATCA | 20 | 7.0169574E-4 | 45.000004 | 17 |
ATACTCG | 20 | 7.0169574E-4 | 45.000004 | 10 |
GTTACGG | 20 | 7.0169574E-4 | 45.000004 | 2 |
CCGTACG | 20 | 7.0169574E-4 | 45.000004 | 1 |
CGGGCTA | 20 | 7.0169574E-4 | 45.000004 | 6 |
AGCTGTA | 20 | 7.0169574E-4 | 45.000004 | 10 |
ACTCGCA | 20 | 7.0169574E-4 | 45.000004 | 12 |
TCGTAGG | 20 | 7.0169574E-4 | 45.000004 | 2 |
TACTCGC | 20 | 7.0169574E-4 | 45.000004 | 11 |
GTTCTTC | 50 | 2.1827873E-11 | 45.0 | 35 |
TAGAATC | 50 | 2.1827873E-11 | 45.0 | 26 |
AAGACGC | 25 | 3.8772778E-5 | 45.0 | 38 |
TACGGGA | 35 | 1.20408E-7 | 45.0 | 4 |
CAAGACG | 25 | 3.8772778E-5 | 45.0 | 37 |
CCACACG | 25 | 3.8772778E-5 | 45.0 | 25 |