FastQCFastQC Report
Sat 14 Jan 2017
SRR2936083.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936083.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175650
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCG4240.2413891261030458No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGC4190.2385425562197552No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTC2390.13606604042129233No Hit
GCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC2330.13265015656134357TruSeq Adapter, Index 15 (95% over 21bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2180.12411044691147168No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGGGCG207.0169574E-445.0000045
CTATGCG207.0169574E-445.0000041
CCCTAGA207.0169574E-445.00000423
CGCGCAG207.0169574E-445.00000435
AATGGTC453.8016879E-1045.00000410
TCGATCA207.0169574E-445.00000417
ATACTCG207.0169574E-445.00000410
GTTACGG207.0169574E-445.0000042
CCGTACG207.0169574E-445.0000041
CGGGCTA207.0169574E-445.0000046
AGCTGTA207.0169574E-445.00000410
ACTCGCA207.0169574E-445.00000412
TCGTAGG207.0169574E-445.0000042
TACTCGC207.0169574E-445.00000411
GTTCTTC502.1827873E-1145.035
TAGAATC502.1827873E-1145.026
AAGACGC253.8772778E-545.038
TACGGGA351.20408E-745.04
CAAGACG253.8772778E-545.037
CCACACG253.8772778E-545.025