Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936082.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 737930 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5687 | 0.7706693046765953 | No Hit |
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1901 | 0.25761251067174396 | No Hit |
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1144 | 0.1550282547125066 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 750 | 0.10163565649858389 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACGGAC | 20 | 7.031643E-4 | 45.0 | 28 |
TCTAGCG | 20 | 7.031643E-4 | 45.0 | 1 |
CTACGAC | 20 | 7.031643E-4 | 45.0 | 12 |
TACGACT | 20 | 7.031643E-4 | 45.0 | 13 |
AGTTACG | 25 | 3.889443E-5 | 45.0 | 1 |
GTATACG | 35 | 1.2111377E-7 | 45.0 | 1 |
TATACGG | 50 | 2.1827873E-11 | 45.0 | 2 |
CGTTATT | 545 | 0.0 | 42.522938 | 1 |
CGTTTTT | 2380 | 0.0 | 42.35294 | 1 |
CGGTTTT | 705 | 0.0 | 41.808514 | 1 |
CGTTTTA | 325 | 0.0 | 41.538464 | 1 |
CGAATAT | 90 | 0.0 | 40.0 | 14 |
ACGAACG | 40 | 3.4559707E-7 | 39.375 | 1 |
TTTCGAC | 35 | 6.245249E-6 | 38.571426 | 24 |
GCGCCAA | 35 | 6.245249E-6 | 38.571426 | 9 |
TCGACGT | 35 | 6.245249E-6 | 38.571426 | 26 |
GATTACG | 35 | 6.245249E-6 | 38.571426 | 1 |
TTCGACG | 35 | 6.245249E-6 | 38.571426 | 25 |
CGGTAGT | 130 | 0.0 | 38.07692 | 12 |
CGTATGG | 95 | 0.0 | 37.894737 | 2 |