SRR2936080.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936080.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	788592
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6717	0.851771258141092	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2137	0.2709893075253109	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1382	0.1752490514740195	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	865	0.10968916752896302	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGACC	20	7.031939E-4	45.0	15
CGCATAG	45	3.8380676E-10	45.0	2
ACTTACG	25	3.8896884E-5	45.0	1
CGTTCGG	20	7.031939E-4	45.0	45
CGTTAGT	25	3.8896884E-5	45.0	38
TATTACG	20	7.031939E-4	45.0	1
CGGTCGT	30	2.164632E-6	44.999996	31
CGTTTTT	3140	0.0	42.0621	1
CGTTATT	670	0.0	41.641792	1
CGGTTTT	740	0.0	40.743244	1
CGTTTTA	420	0.0	40.714287	1
CGGTTTA	100	0.0	40.5	1
GCGCATA	45	1.9270374E-8	40.0	1
CGAATAT	90	0.0	40.0	14
TACGGGA	425	0.0	38.647057	4
CACGACG	35	6.245793E-6	38.57143	26
ACGGGCG	140	0.0	38.57143	5
GCGATCT	70	0.0	38.57143	9
CTACGAA	95	0.0	37.894737	11
ACGGGAG	435	0.0	37.75862	5