SRR2936078.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936078.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	602943
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCG	1100	0.18243847262510718	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTC	1011	0.16767754165816667	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGC	946	0.15689708645759218	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	843	0.13981421129360488	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAC	20	7.030614E-4	45.000004	32
TCTACGG	25	3.8885904E-5	45.000004	2
TTAACGG	20	7.030614E-4	45.000004	2
TCGATCA	30	2.1637788E-6	44.999996	17
GTATACG	30	2.1637788E-6	44.999996	1
GCTACGA	110	0.0	42.954544	10
CGTTTTA	75	0.0	42.0	1
TACGGGA	210	0.0	41.785713	4
ATAGGCG	50	1.0804797E-9	40.500004	5
ATCACGG	45	1.925764E-8	40.0	2
TTTGACG	45	1.925764E-8	40.0	1
ATTTGCG	45	1.925764E-8	40.0	1
TATCACG	40	3.45457E-7	39.375004	1
AGGCGAT	170	0.0	38.382355	7
ACAACGA	135	0.0	38.333332	13
CGAATAT	125	0.0	37.8	14
TTACGGG	125	0.0	37.8	3
ACACGAC	90	0.0	37.5	26
TCACGGT	30	1.1392782E-4	37.499996	14
CCGGATA	30	1.1392782E-4	37.499996	21