SRR2936077.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936077.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	240847
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC	1461	0.6066091751194742	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG	1457	0.6049483697118918	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTC	650	0.26988087873214117	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	331	0.13743164747744419	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	325	0.13494043936607059	TruSeq Adapter, Index 15 (95% over 22bp)
GAATAATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG	291	0.12082359340162012	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCT	271	0.11251956636370809	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC	267	0.11085876095612568	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGAT	20	7.022169E-4	45.000004	21
GATGTTA	20	7.022169E-4	45.000004	9
GTATTAG	20	7.022169E-4	45.000004	1
CATGCAA	20	7.022169E-4	45.000004	37
TCCGACA	20	7.022169E-4	45.000004	21
TCCTGAC	20	7.022169E-4	45.000004	20
GCCGGAT	40	6.7757355E-9	45.000004	19
AAAGTAG	20	7.022169E-4	45.000004	39
CTAAATG	20	7.022169E-4	45.000004	1
AATTCGG	20	7.022169E-4	45.000004	9
CCGACAC	20	7.022169E-4	45.000004	22
TTCGGTA	20	7.022169E-4	45.000004	35
AACTCAA	20	7.022169E-4	45.000004	44
CGGTACT	20	7.022169E-4	45.000004	37
CTTACGG	20	7.022169E-4	45.000004	2
GCTCACT	20	7.022169E-4	45.000004	39
TAATACG	55	1.8189894E-12	45.0	4
GGTGTCG	25	3.881595E-5	45.0	14
CGGCATC	25	3.881595E-5	45.0	36
TAGCGCG	25	3.881595E-5	45.0	1