SRR2936076.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936076.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	170437
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	1909	1.1200619583775824	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	1582	0.9282022096141096	No Hit
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	1358	0.7967753480758286	No Hit
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	696	0.40836203406537314	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT	415	0.24349173008208314	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	370	0.21708901236233916	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	352	0.20652792527444158	No Hit
TGCATGGGAGGGAAAATCTGTTTCTTGTTCTGTTACAACTTTCTGAATGTT	312	0.1830588428568914	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTC	294	0.17249775576899382	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	292	0.17132430164811632	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	291	0.17073757458767755	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	254	0.14902867335144365	No Hit
GAATATGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	248	0.14550831098881112	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	230	0.13494722390091354	No Hit
CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT	228	0.13377376978003602	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	226	0.13260031565915853	No Hit
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTT	222	0.1302534074174035	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	220	0.129079953296526	No Hit
GAATCTATCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	197	0.11558523090643463	No Hit
CCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	190	0.11147814148336337	No Hit
TCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	181	0.10619759793941456	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTAA	20	7.016364E-4	45.000004	26
TAATACG	50	2.1827873E-11	45.000004	4
ATCTATG	20	7.016364E-4	45.000004	30
TACCAGA	20	7.016364E-4	45.000004	11
CAACGGG	25	3.8767852E-5	45.000004	3
GATCCAT	20	7.016364E-4	45.000004	9
ATAGAGT	20	7.016364E-4	45.000004	14
AAGCGAA	20	7.016364E-4	45.000004	1
TATGATG	20	7.016364E-4	45.000004	33
ACCTCGC	20	7.016364E-4	45.000004	29
CCCAATC	25	3.8767852E-5	45.000004	29
TGCGCGG	40	6.7557266E-9	45.000004	2
TCATGTG	20	7.016364E-4	45.000004	12
GGAACTA	20	7.016364E-4	45.000004	8
TATTAGG	20	7.016364E-4	45.000004	2
GGAGTTA	20	7.016364E-4	45.000004	31
TGTTACG	20	7.016364E-4	45.000004	1
AGCGAAG	25	3.8767852E-5	45.000004	2
GGACGCT	20	7.016364E-4	45.000004	8
CATGTGT	20	7.016364E-4	45.000004	13

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content