SRR2936073.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936073.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	962050
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	4620	0.4802245205550647	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT	2812	0.29229250038979265	No Hit
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCCTC	1807	0.18782807546385324	No Hit
GCTCAACTTGACCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATG	1401	0.1456265266878021	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1275	0.13252949430902758	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC	1004	0.10436048022452056	RNA PCR Primer, Index 35 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGC	25	3.89033E-5	45.0	44
TGCGACG	40	6.8139343E-9	45.0	1
GCTACGA	80	0.0	45.0	10
TACCGCG	20	7.032714E-4	45.0	1
TTGACCC	1745	0.0	43.32378	8
CTACGAA	85	0.0	42.35294	11
CTCAACT	1745	0.0	41.905445	2
CTTGACC	1710	0.0	41.842106	7
CATTAGA	1620	0.0	41.666664	17
TGCATTA	1650	0.0	41.181816	15
GCTCAAC	1875	0.0	41.04	1
ACTTGAC	1765	0.0	40.66572	6
TCAACTT	1775	0.0	40.563377	3
GCATTAG	1700	0.0	40.102943	16
GTAGACG	45	1.927765E-8	40.0	1
TACGAAT	90	0.0	40.0	12
ACCCTGC	1730	0.0	39.537575	11
CCTGCAT	1730	0.0	39.537575	13
ATTGACC	305	0.0	39.098362	7
TGACCCT	1755	0.0	38.974358	9