SRR2936072.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936072.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	642246
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCG	2856	0.4446894180734485	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGC	2537	0.39501997676902617	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTC	2089	0.32526477393397546	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1185	0.1845087396418195	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	859	0.13374937329309952	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATACT	25	3.8888757E-5	45.000004	25
AGCGTAA	20	7.03096E-4	45.0	33
CAACCGC	20	7.03096E-4	45.0	16
GCTAACG	35	1.2108103E-7	45.0	1
TTACGGG	165	0.0	42.272728	3
TACGGCT	485	0.0	41.75258	7
CGTTATT	125	0.0	41.4	1
CGGGACC	185	0.0	40.135136	6
TCTACGG	45	1.925946E-8	40.0	2
AGACACG	165	0.0	39.545456	24
CGCATGG	75	0.0	39.0	2
TAATACG	110	0.0	38.863636	4
CCCTCGA	35	6.243985E-6	38.571426	23
TACGAAT	175	0.0	38.571426	12
CGTACAT	35	6.243985E-6	38.571426	35
TAGACGG	95	0.0	37.894737	2
AACGGGA	185	0.0	37.7027	4
CCGATAC	30	1.13936076E-4	37.500004	18
AACGATT	30	1.13936076E-4	37.500004	10
AACGAGT	30	1.13936076E-4	37.500004	29