Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936071.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 752325 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4768 | 0.6337686505167315 | No Hit |
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1419 | 0.18861529259296184 | No Hit |
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 928 | 0.12335094540258532 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 894 | 0.11883162197188715 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGACGA | 20 | 7.031732E-4 | 45.0 | 9 |
CGACGGT | 25 | 3.8895167E-5 | 45.0 | 28 |
TCTCGTA | 35 | 1.2111741E-7 | 45.0 | 28 |
CGCTAAA | 20 | 7.031732E-4 | 45.0 | 44 |
CGGTCTA | 20 | 7.031732E-4 | 45.0 | 31 |
CGCCAAT | 20 | 7.031732E-4 | 45.0 | 30 |
CGTTATT | 405 | 0.0 | 43.888885 | 1 |
CTCGATC | 65 | 0.0 | 41.538464 | 16 |
CGTTTTT | 2100 | 0.0 | 39.535717 | 1 |
GCTACGA | 150 | 0.0 | 39.0 | 10 |
TAGCACG | 70 | 0.0 | 38.571426 | 1 |
TCGTACG | 35 | 6.245413E-6 | 38.571426 | 30 |
CCTCGAT | 60 | 1.546141E-10 | 37.500004 | 15 |
CGGTTTA | 85 | 0.0 | 37.058823 | 1 |
CCCTCGT | 55 | 2.746674E-9 | 36.818184 | 14 |
CGTTGAT | 55 | 2.746674E-9 | 36.818184 | 25 |
CCTCGTG | 55 | 2.746674E-9 | 36.818184 | 15 |
TACGAAT | 160 | 0.0 | 36.5625 | 12 |
CGAATAT | 160 | 0.0 | 36.5625 | 14 |
ACGGGCT | 185 | 0.0 | 36.486485 | 5 |