SRR2936065.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936065.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	559077
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2201	0.39368459085242286	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	729	0.13039348783799012	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	20	7.030173E-4	45.000004	2
GCCGATC	25	3.8882255E-5	45.000004	9
GAGCGTA	25	3.8882255E-5	45.000004	8
AATTGCG	30	2.1634933E-6	45.000004	1
TACTCGC	20	7.030173E-4	45.000004	45
TTCGGTG	30	2.1634933E-6	45.000004	21
TCGAGTC	20	7.030173E-4	45.000004	29
CGCACGG	20	7.030173E-4	45.000004	2
TGCAACG	45	3.8380676E-10	45.000004	1
AAGCGCC	35	1.2104283E-7	45.0	14
TACGCGG	35	1.2104283E-7	45.0	2
TGCGACG	35	1.2104283E-7	45.0	1
CGATGAT	35	1.2104283E-7	45.0	10
CGCCCCG	35	1.2104283E-7	45.0	17
CGACGGG	60	3.6379788E-12	41.250004	3
CGTTTTT	1005	0.0	40.97015	1
TTGTGCG	55	6.002665E-11	40.909092	1
GCGGCTA	50	1.0786607E-9	40.500004	24
CGGCTAC	50	1.0786607E-9	40.500004	25
GGCCGAT	95	0.0	40.263157	8