SRR2936062.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936062.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	683621
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2779	0.4065117952783779	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCG	1004	0.14686500268423586	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	976	0.14276916595599023	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTC	944	0.13808820969513808	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC	755	0.11044131177948015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	30	2.1642063E-6	45.000004	31
ACACGAC	35	1.2109558E-7	45.0	26
GTCGAGT	20	7.031278E-4	45.0	20
CCGTGAC	20	7.031278E-4	45.0	22
CGATTCG	20	7.031278E-4	45.0	10
CACGACC	25	3.8891416E-5	45.0	27
CGCGAAG	20	7.031278E-4	45.0	2
CGTAGGA	25	3.8891416E-5	45.0	4
ACTACGG	25	3.8891416E-5	45.0	2
TTGCGTT	20	7.031278E-4	45.0	26
CATACGT	20	7.031278E-4	45.0	27
CCGCGTT	20	7.031278E-4	45.0	18
TATCCGG	20	7.031278E-4	45.0	2
TACGGGA	355	0.0	43.09859	4
ACGGGTA	65	0.0	41.538464	5
GCTACGA	120	0.0	41.250004	10
CGTTTTT	1240	0.0	41.008068	1
CGTTATT	260	0.0	40.67308	1
TAGCGCG	50	1.0804797E-9	40.5	1
TCCATCG	45	1.9263098E-8	40.0	30