SRR2936061.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936061.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	872406
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7563	0.8669128823047983	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2493	0.2857614459322838	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	1843	0.2112548515255512	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG	1642	0.1882151200243923	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC	1561	0.17893045210601485	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1501	0.17205292031462416	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1022	0.11714729151335501	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACCGG	35	1.2114833E-7	45.000004	2
CGTATAG	20	7.032352E-4	45.0	2
CGCATGG	55	1.8189894E-12	45.0	2
TCGCTAA	20	7.032352E-4	45.0	11
TAAGACG	20	7.032352E-4	45.0	1
TATAGCG	30	2.1648975E-6	44.999996	1
CGTTATT	655	0.0	42.59542	1
CGTTTTA	450	0.0	42.0	1
CGTTTTT	3420	0.0	41.973686	1
TACGGGT	130	0.0	41.538464	4
CGGTTTT	865	0.0	40.83815	1
ACACGTG	80	0.0	39.375	42
CACGTGA	80	0.0	39.375	43
GCTACGA	115	0.0	39.130432	10
TCTACGG	65	9.094947E-12	38.076927	2
TCGTCGA	30	1.1396964E-4	37.499996	41
ACCCCGC	30	1.1396964E-4	37.499996	17
CTACGGG	175	0.0	37.285717	3
CTCGTAA	145	0.0	37.24138	33
AGGCGAT	200	0.0	37.125	7