SRR2936057.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936057.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	162749
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG	351	0.21566952792336666	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	321	0.19723623493846354	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	303	0.18617625914752164	No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	234	0.14377968528224444	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT	172	0.10568421311344463	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	170	0.10445532691445109	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	168	0.10322644071545754	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	20	7.015425E-4	45.000004	3
GTCATAC	25	3.8760074E-5	45.000004	39
AACCGTG	20	7.015425E-4	45.000004	11
AGCAATC	20	7.015425E-4	45.000004	44
CGTGGGA	20	7.015425E-4	45.000004	4
CTCACTA	20	7.015425E-4	45.000004	45
CGTATGG	20	7.015425E-4	45.000004	2
CGTATCC	20	7.015425E-4	45.000004	26
GATCGGC	20	7.015425E-4	45.000004	10
ATAGGGT	20	7.015425E-4	45.000004	4
AGATACG	20	7.015425E-4	45.000004	33
TGGACGC	20	7.015425E-4	45.000004	12
GGGTCCG	20	7.015425E-4	45.000004	7
CGGTTTT	25	3.8760074E-5	45.000004	1
ATTACCA	20	7.015425E-4	45.000004	44
GGTCCGC	25	3.8760074E-5	45.000004	8
CACGCCA	25	3.8760074E-5	45.000004	27
TAAACCG	20	7.015425E-4	45.000004	9
GTGATTA	25	3.8760074E-5	45.000004	15
ATTCGTA	20	7.015425E-4	45.000004	34