FastQCFastQC Report
Sat 14 Jan 2017
SRR2936057.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936057.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162749
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG3510.21566952792336666No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC3210.19723623493846354No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC3030.18617625914752164No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC2340.14377968528224444No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT1720.10568421311344463No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1700.10445532691445109No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1680.10322644071545754No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGGG207.015425E-445.0000043
GTCATAC253.8760074E-545.00000439
AACCGTG207.015425E-445.00000411
AGCAATC207.015425E-445.00000444
CGTGGGA207.015425E-445.0000044
CTCACTA207.015425E-445.00000445
CGTATGG207.015425E-445.0000042
CGTATCC207.015425E-445.00000426
GATCGGC207.015425E-445.00000410
ATAGGGT207.015425E-445.0000044
AGATACG207.015425E-445.00000433
TGGACGC207.015425E-445.00000412
GGGTCCG207.015425E-445.0000047
CGGTTTT253.8760074E-545.0000041
ATTACCA207.015425E-445.00000444
GGTCCGC253.8760074E-545.0000048
CACGCCA253.8760074E-545.00000427
TAAACCG207.015425E-445.0000049
GTGATTA253.8760074E-545.00000415
ATTCGTA207.015425E-445.00000434