Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936057.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 162749 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG | 351 | 0.21566952792336666 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC | 321 | 0.19723623493846354 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC | 303 | 0.18617625914752164 | No Hit |
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC | 234 | 0.14377968528224444 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT | 172 | 0.10568421311344463 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 170 | 0.10445532691445109 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 168 | 0.10322644071545754 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCACGGG | 20 | 7.015425E-4 | 45.000004 | 3 |
GTCATAC | 25 | 3.8760074E-5 | 45.000004 | 39 |
AACCGTG | 20 | 7.015425E-4 | 45.000004 | 11 |
AGCAATC | 20 | 7.015425E-4 | 45.000004 | 44 |
CGTGGGA | 20 | 7.015425E-4 | 45.000004 | 4 |
CTCACTA | 20 | 7.015425E-4 | 45.000004 | 45 |
CGTATGG | 20 | 7.015425E-4 | 45.000004 | 2 |
CGTATCC | 20 | 7.015425E-4 | 45.000004 | 26 |
GATCGGC | 20 | 7.015425E-4 | 45.000004 | 10 |
ATAGGGT | 20 | 7.015425E-4 | 45.000004 | 4 |
AGATACG | 20 | 7.015425E-4 | 45.000004 | 33 |
TGGACGC | 20 | 7.015425E-4 | 45.000004 | 12 |
GGGTCCG | 20 | 7.015425E-4 | 45.000004 | 7 |
CGGTTTT | 25 | 3.8760074E-5 | 45.000004 | 1 |
ATTACCA | 20 | 7.015425E-4 | 45.000004 | 44 |
GGTCCGC | 25 | 3.8760074E-5 | 45.000004 | 8 |
CACGCCA | 25 | 3.8760074E-5 | 45.000004 | 27 |
TAAACCG | 20 | 7.015425E-4 | 45.000004 | 9 |
GTGATTA | 25 | 3.8760074E-5 | 45.000004 | 15 |
ATTCGTA | 20 | 7.015425E-4 | 45.000004 | 34 |