SRR2936056.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936056.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681895
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4327	0.6345551734504579	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1300	0.1906451873088965	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	845	0.12391937175078274	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGC	797	0.11688016483476195	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCG	784	0.11497371296167297	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCCGC	20	7.031266E-4	45.0	15
TGCGGTC	20	7.031266E-4	45.0	15
ATCCGAC	20	7.031266E-4	45.0	43
CTCGAGT	20	7.031266E-4	45.0	26
CGACTAG	20	7.031266E-4	45.0	2
GTCGGCT	20	7.031266E-4	45.0	19
AACTCGA	30	2.164199E-6	44.999996	10
AATCGAG	30	2.164199E-6	44.999996	1
CACGACC	65	0.0	41.538464	27
CGTTTTT	1935	0.0	41.51163	1
CTAACGG	60	3.6379788E-12	41.249996	2
CGTCATA	55	6.002665E-11	40.909092	38
CGTTATT	385	0.0	40.324677	1
CGTTTTA	185	0.0	40.135136	1
CGAGTGA	40	3.4554614E-7	39.375	40
TCTCGTA	40	3.4554614E-7	39.375	28
CGATGCA	40	3.4554614E-7	39.375	10
TTTGACG	40	3.4554614E-7	39.375	1
ACGACCA	70	0.0	38.571426	28
GACTACG	35	6.2445524E-6	38.571426	1