SRR2936055.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936055.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347879
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCG	1077	0.30959040355985845	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGC	993	0.28544407681981376	No Hit
GAATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTC	642	0.18454692579891283	No Hit
GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	544	0.15637621126886073	TruSeq Adapter, Index 20 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	524	0.15062708585456439	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	418	0.12015672115879372	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	360	0.1034842574573343	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	350	0.10060969475018612	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTAGC	25	3.8851773E-5	45.000004	27
CAAACGG	25	3.8851773E-5	45.000004	2
ATTAGGT	20	7.0264953E-4	45.000004	4
CAACGTT	25	3.8851773E-5	45.000004	39
TTTCGTC	20	7.0264953E-4	45.000004	15
CGGTTGC	20	7.0264953E-4	45.000004	45
TTATGAG	25	3.8851773E-5	45.000004	1
TAAACGG	20	7.0264953E-4	45.000004	2
CAATTGC	20	7.0264953E-4	45.000004	36
TTCCGAG	20	7.0264953E-4	45.000004	15
CGATTAC	30	2.1611213E-6	45.000004	10
TCGATTG	20	7.0264953E-4	45.000004	1
TCGATGG	30	2.1611213E-6	45.000004	2
TGACGAA	20	7.0264953E-4	45.000004	1
TCTAGGC	20	7.0264953E-4	45.000004	30
AACGGCT	25	3.8851773E-5	45.000004	7
CGGGCAC	40	6.7921064E-9	45.000004	6
GATATGT	20	7.0264953E-4	45.000004	9
CGAATGT	20	7.0264953E-4	45.000004	44
CGAATAT	50	2.1827873E-11	45.000004	14