SRR2936050.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936050.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	436565
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	713	0.16332046774248965	No Hit
GCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC	468	0.10720053142143783	No Hit
TAGGGGAGGAGCTTTGACCAATTTGACATAGAGCTGGAATGTAACGTTGCT	454	0.10399367791737771	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	45	3.8380676E-10	45.000004	1
ATTACGG	35	1.2096098E-7	45.000004	2
TAAAGCG	20	7.028475E-4	45.0	1
CCGATAC	20	7.028475E-4	45.0	11
CGGCCAG	20	7.028475E-4	45.0	10
GATCCGC	20	7.028475E-4	45.0	9
TAGCACG	25	3.8868173E-5	45.0	1
TCGTCAA	20	7.028475E-4	45.0	33
CTCGATT	20	7.028475E-4	45.0	28
TTGCACG	20	7.028475E-4	45.0	1
AATACCG	20	7.028475E-4	45.0	16
TAGTACG	25	3.8868173E-5	45.0	1
GTCGGAG	40	6.7975634E-9	45.0	1
CGGACTA	20	7.028475E-4	45.0	6
GTAACGT	90	0.0	42.500004	41
AACGTTG	85	0.0	42.35294	43
ACGTTGC	85	0.0	42.35294	44
TAGACGG	50	1.0786607E-9	40.5	2
CGTTCGG	45	1.9235813E-8	40.000004	2
AACGCAT	40	3.4516597E-7	39.375	42