SRR2936049.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936049.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397543
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCG	5609	1.410916554938711	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTC	4322	1.0871779908085415	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGC	4190	1.0539740355131395	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT	1235	0.3106582181047082	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCG	1060	0.2666378228267131	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTC	928	0.23343386753131107	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTT	882	0.22186279220109523	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCG	846	0.21280716802962196	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCT	799	0.20098454758353182	No Hit
GAATATGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTC	795	0.1999783671200348	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	763	0.19192892341205858	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGC	705	0.17733930669135162	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGC	658	0.16551668624526153	No Hit
GAATCTATCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTC	626	0.15746724253728528	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	578	0.14539307697532092	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTA	415	0.10439122308781691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	30	2.1619053E-6	45.000004	2
CGCGGGT	35	1.209246E-7	45.000004	4
TACGGGT	35	1.209246E-7	45.000004	4
ACGATGG	30	2.1619053E-6	45.000004	2
TAGGCGA	30	2.1619053E-6	45.000004	6
GGTAGCG	30	2.1619053E-6	45.000004	1
TCGCCGC	20	7.0277124E-4	45.0	28
CGGGTAC	25	3.886186E-5	45.0	6
ACTTGCG	20	7.0277124E-4	45.0	1
TAGCGCA	20	7.0277124E-4	45.0	19
CGCGAAG	20	7.0277124E-4	45.0	2
ACGGGTA	40	6.7957444E-9	45.0	5
TCTAGCG	20	7.0277124E-4	45.0	1
ATCGTTC	20	7.0277124E-4	45.0	30
GCCGCGG	20	7.0277124E-4	45.0	30
CACTACG	20	7.0277124E-4	45.0	16
ACGTGCG	25	3.886186E-5	45.0	1
AGACCGA	20	7.0277124E-4	45.0	7
AGCGCAT	20	7.0277124E-4	45.0	20
CGTCGGG	20	7.0277124E-4	45.0	2