SRR2936048.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936048.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	560519
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1692	0.301863094738983	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCG	640	0.11417989399110466	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTC	609	0.10864930537591054	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCAAA	20	7.0301886E-4	45.000004	1
CGTGAAC	20	7.0301886E-4	45.000004	28
ATTCGGA	20	7.0301886E-4	45.000004	18
GTTCGCA	20	7.0301886E-4	45.000004	7
TGACACG	20	7.0301886E-4	45.000004	1
GTGCGTA	20	7.0301886E-4	45.000004	9
CCCGACA	20	7.0301886E-4	45.000004	17
CGTTATT	110	0.0	45.0	1
AACGGCT	25	3.888239E-5	45.0	7
ATGCGCG	25	3.888239E-5	45.0	1
TGTAACG	35	1.2104465E-7	45.0	1
AGTAACG	35	1.2104465E-7	45.0	1
AGGCGAT	130	0.0	43.26923	7
TAGGCGA	60	3.6379788E-12	41.249996	6
CGTTTTT	695	0.0	40.143887	1
CGGTTTT	230	0.0	40.1087	1
CGATGAT	45	1.9252184E-8	40.0	10
TTTGACG	45	1.9252184E-8	40.0	1
TAGCCGT	40	3.453988E-7	39.375004	44
GTAACGG	105	0.0	38.57143	2