SRR2936046.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936046.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	537906
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5771	1.072864032005592	No Hit
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	1705	0.31696987949567396	No Hit
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	1614	0.30005242551672595	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCG	1131	0.21025978516692506	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTC	1091	0.2028235416596952	No Hit
CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGCT	1090	0.20263763557201447	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCC	939	0.17456581633222162	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGC	835	0.1552315832134239	No Hit
TCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	785	0.14593627882938653	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	712	0.132365134428692	No Hit
ACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	564	0.10485103345194142	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCA	20	7.0299354E-4	45.000004	15
CGAACTA	20	7.0299354E-4	45.000004	12
ACGCATG	30	2.1633405E-6	45.000004	1
CGACGAT	20	7.0299354E-4	45.000004	20
GCGCAAC	20	7.0299354E-4	45.000004	15
CTAACGG	20	7.0299354E-4	45.000004	2
CGTAGTC	20	7.0299354E-4	45.000004	12
AACGCGC	20	7.0299354E-4	45.000004	31
GCGATAT	40	6.8030204E-9	45.000004	9
TCGTAGT	20	7.0299354E-4	45.000004	11
TCGTAAG	35	1.2103192E-7	45.000004	1
GTATACG	20	7.0299354E-4	45.000004	1
CCGAACT	30	2.1633405E-6	45.000004	11
GACGATT	20	7.0299354E-4	45.000004	42
TAGGACG	40	6.8030204E-9	45.000004	1
TAGTGCG	20	7.0299354E-4	45.000004	1
CGCCGAC	20	7.0299354E-4	45.000004	13
TGTCGTC	20	7.0299354E-4	45.000004	35
ATCGCAT	20	7.0299354E-4	45.000004	14
TCGCGCC	20	7.0299354E-4	45.000004	38