SRR2936044.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936044.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	735311
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6238	0.8483485219179367	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	2059	0.2800175707965745	TruSeq Adapter, Index 23 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC	1991	0.27076978312577943	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCG	1923	0.26152199545498434	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC	1683	0.2288827448521782	No Hit
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT	1080	0.14687662771262772	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCC	860	0.1169573146600554	No Hit
CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	816	0.11097345204954094	TruSeq Adapter, Index 23 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTGTC	25	3.8894294E-5	45.000004	19
CGGTCGA	25	3.8894294E-5	45.000004	36
AACGTTG	45	3.8380676E-10	45.0	1
CGCGGTA	20	7.031628E-4	45.0	31
CGACCGT	20	7.031628E-4	45.0	35
TTCGTGT	20	7.031628E-4	45.0	28
TGCGGAT	20	7.031628E-4	45.0	18
TCGGACG	20	7.031628E-4	45.0	1
TATTACG	20	7.031628E-4	45.0	1
GTATACG	20	7.031628E-4	45.0	1
GTCGACC	30	2.1644319E-6	44.999996	41
CGTTTTT	2220	0.0	41.655403	1
CGTTATT	330	0.0	41.59091	1
CGTTCAT	50	1.0804797E-9	40.500004	17
TGTAGCG	50	1.0804797E-9	40.500004	1
GCGAGAC	45	1.9266736E-8	40.0	21
ACACGAC	45	1.9266736E-8	40.0	26
TCACGTC	45	1.9266736E-8	40.0	38
ATGGGAC	345	0.0	39.782608	5
TAGGGCG	165	0.0	39.545456	5