SRR2936042.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936042.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	547671
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7203	1.315205661793303	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1038	0.1895298454729208	No Hit
GCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	858	0.1566633982810848	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	814	0.14862937785641378	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTC	775	0.14150831429818267	No Hit
CCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	682	0.12452731658240074	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGCT	644	0.1175888443974576	TruSeq Adapter, Index 16 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCG	574	0.10480744826729917	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCC	549	0.10024266393509973	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACTA	35	1.2103737E-7	45.000004	9
CGTGCTA	20	7.030047E-4	45.000004	29
GCGAATG	20	7.030047E-4	45.000004	1
ATTACGA	20	7.030047E-4	45.000004	25
AGGCGAT	30	2.1634114E-6	45.000004	30
TCGATCA	25	3.888121E-5	45.000004	17
CATTACG	20	7.030047E-4	45.000004	24
TAGCACG	25	3.888121E-5	45.000004	1
TACGACG	20	7.030047E-4	45.000004	1
TCCACGT	20	7.030047E-4	45.000004	19
TCGTACA	25	3.888121E-5	45.000004	34
CGTTTAG	20	7.030047E-4	45.000004	11
TGTAACG	45	3.8380676E-10	45.0	1
CGTTTTT	3365	0.0	43.93016	1
CGAATAT	140	0.0	41.785717	14
TCACGAC	45	1.9252184E-8	40.0	25
CTCACGA	45	1.9252184E-8	40.0	24
ACGATAG	45	1.9252184E-8	40.0	1
CGTTATT	525	0.0	39.857143	1
TACGGTT	75	0.0	39.0	33