SRR2936041.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936041.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	574605
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4653	0.8097736706085049	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC	1378	0.23981691770868685	Illumina PCR Primer Index 9 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCG	1169	0.20344410508088165	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGC	1052	0.18308229131316295	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTC	1005	0.17490275928681442	RNA PCR Primer, Index 17 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGCT	613	0.10668198153514154	RNA PCR Primer, Index 17 (96% over 25bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCC	605	0.10528972076469924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGAT	35	1.210501E-7	45.000004	25
ACGTAAG	30	2.1635988E-6	45.000004	1
TAATCGT	35	1.210501E-7	45.000004	21
TCACGAC	25	3.888362E-5	45.0	25
ACACGAA	40	6.8048394E-9	45.0	44
TCTAGCG	25	3.888362E-5	45.0	1
CGCTACG	20	7.0303393E-4	45.0	37
CTCGCGC	25	3.888362E-5	45.0	33
GTATACG	25	3.888362E-5	45.0	1
CAGTCGA	20	7.0303393E-4	45.0	13
TAGTGCG	50	2.1827873E-11	45.0	1
CTAATCG	20	7.0303393E-4	45.0	31
GTACGAG	25	3.888362E-5	45.0	1
ATTTCGG	20	7.0303393E-4	45.0	2
CGTTATT	310	0.0	42.82258	1
CGTTTTT	1895	0.0	42.506596	1
CGTAAGG	110	0.0	40.90909	2
CATCGAA	55	6.002665E-11	40.90909	42
CACGGTG	45	1.9254003E-8	40.000004	33
AACGTAG	40	3.4542063E-7	39.375	1