SRR2936038.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936038.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	875334
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC	17146	1.9587951570486237	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16476	1.8822529457327146	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCG	13154	1.5027406681335354	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC	11835	1.3520553297369917	No Hit
GAACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCT	5562	0.6354145960284875	No Hit
GCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	4973	0.5681259953343524	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCT	3526	0.40281766731327695	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTA	2555	0.2918885819584296	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTC	2548	0.291088887213338	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTACGAAGT	2505	0.2861764766363468	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTT	2435	0.27817952918543093	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1901	0.21717424434558696	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	1699	0.19409733884437255	No Hit
GAATATGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC	1650	0.18849947562873143	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCG	1517	0.17330527547199126	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCC	1378	0.15742562267660115	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC	1316	0.15034261207721852	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGG	30	2.1649066E-6	45.000004	2
CGTCGAA	115	0.0	45.000004	42
GTCGATC	20	7.032365E-4	45.0	14
GTAGACG	20	7.032365E-4	45.0	1
TCCGTTG	25	3.8900405E-5	45.0	1
CACGTTA	20	7.032365E-4	45.0	44
CGATCGA	20	7.032365E-4	45.0	41
GCCGTAC	20	7.032365E-4	45.0	33
CCCGCGA	35	1.2114833E-7	45.0	41
TACGGGT	65	0.0	44.999996	4
CGTTTTT	7910	0.0	44.004425	1
TAATACG	645	0.0	43.953487	4
GTCGAAT	375	0.0	43.8	43
CGATGAA	3815	0.0	43.23067	19
CCGATGA	3760	0.0	43.085106	18
CAGTCGA	235	0.0	43.085106	41
GATGAAT	3945	0.0	42.88973	20
CCGTCGA	105	0.0	42.857147	41
CCCGTCG	105	0.0	42.857147	40
CCGTACA	105	0.0	42.857147	41