SRR2936034.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936034.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	229475
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5150	2.2442531866216364	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCG	1110	0.483712822747576	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTC	999	0.43534154047281837	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGC	989	0.4309837672949123	No Hit
GCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	904	0.3939426952827106	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	647	0.281947924610524	No Hit
CCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	640	0.27889748338598974	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCC	449	0.19566401568798347	No Hit
CTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGCT	443	0.1930493517812398	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	382	0.16646693539601262	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	313	0.13639830046846063	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	284	0.12376075825253295	No Hit
ACTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	283	0.12332498093474235	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	20	7.0214743E-4	45.000004	13
ACTATTC	20	7.0214743E-4	45.000004	10
CGGGTCA	20	7.0214743E-4	45.000004	7
CGTGGCG	25	3.8810173E-5	45.000004	5
CGGCGGA	20	7.0214743E-4	45.000004	44
GTACCTA	20	7.0214743E-4	45.000004	24
CGGCGAA	40	6.7739165E-9	45.000004	31
CGAACAC	25	3.8810173E-5	45.000004	34
CCGATTC	20	7.0214743E-4	45.000004	11
CAACGAG	20	7.0214743E-4	45.000004	14
GCGAACA	25	3.8810173E-5	45.000004	33
GGCACCG	25	3.8810173E-5	45.000004	8
TTTCGCG	20	7.0214743E-4	45.000004	1
CGGCAGG	20	7.0214743E-4	45.000004	2
CCAATCA	20	7.0214743E-4	45.000004	41
CGACCCG	25	3.8810173E-5	45.000004	10
TTCGTTG	20	7.0214743E-4	45.000004	1
GTTAGCG	20	7.0214743E-4	45.000004	1
ATCACTA	20	7.0214743E-4	45.000004	25
TGTTGCG	20	7.0214743E-4	45.000004	1