##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936034.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 229475 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.01362239895413 33.0 31.0 34.0 30.0 34.0 2 32.16148164288049 33.0 31.0 34.0 30.0 34.0 3 31.98391545920035 33.0 31.0 34.0 30.0 34.0 4 35.700773504739075 37.0 35.0 37.0 33.0 37.0 5 31.954387188146857 37.0 35.0 37.0 0.0 37.0 6 33.80458873515634 37.0 35.0 37.0 17.0 37.0 7 35.488946508334244 37.0 35.0 37.0 32.0 37.0 8 35.74503540690707 37.0 35.0 37.0 35.0 37.0 9 37.712138577187055 39.0 37.0 39.0 35.0 39.0 10 37.427392962196315 39.0 37.0 39.0 34.0 39.0 11 37.36637977993245 39.0 37.0 39.0 34.0 39.0 12 37.21981043686676 39.0 37.0 39.0 34.0 39.0 13 37.053661618912734 39.0 37.0 39.0 33.0 39.0 14 38.240710317028 40.0 37.0 41.0 33.0 41.0 15 38.42007190325744 40.0 37.0 41.0 34.0 41.0 16 38.43850528379998 40.0 37.0 41.0 34.0 41.0 17 38.414624686785054 40.0 37.0 41.0 34.0 41.0 18 38.19721538293932 39.0 37.0 41.0 34.0 41.0 19 37.92353851182046 39.0 37.0 41.0 34.0 41.0 20 37.79835276173875 39.0 35.0 41.0 34.0 41.0 21 37.712230090423795 39.0 35.0 41.0 34.0 41.0 22 37.72681555725025 39.0 35.0 41.0 34.0 41.0 23 37.73658568471511 39.0 35.0 41.0 34.0 41.0 24 37.69392744307659 39.0 35.0 41.0 34.0 41.0 25 37.43446998583724 39.0 35.0 41.0 33.0 41.0 26 37.44615753350038 39.0 35.0 41.0 33.0 41.0 27 37.40518139230853 39.0 35.0 41.0 33.0 41.0 28 37.32045756618368 39.0 35.0 41.0 33.0 41.0 29 37.232596143370735 39.0 35.0 41.0 33.0 41.0 30 37.01309946617278 39.0 35.0 41.0 33.0 41.0 31 36.82353633293387 39.0 35.0 41.0 32.0 41.0 32 36.50696590042488 39.0 35.0 41.0 31.0 41.0 33 36.14082579801721 39.0 35.0 41.0 30.0 41.0 34 35.810062098267785 39.0 35.0 41.0 27.0 41.0 35 35.642200675454845 39.0 35.0 41.0 25.0 41.0 36 35.45169190543632 39.0 35.0 41.0 24.0 41.0 37 35.37206667392962 39.0 35.0 41.0 23.0 41.0 38 35.257579256999676 39.0 35.0 41.0 23.0 41.0 39 35.186987689290774 39.0 35.0 41.0 23.0 41.0 40 35.09136507244798 39.0 35.0 41.0 23.0 41.0 41 34.99007735047391 38.0 35.0 41.0 22.0 41.0 42 34.952539492319424 38.0 35.0 41.0 22.0 41.0 43 34.82464320732106 38.0 35.0 41.0 21.0 41.0 44 34.789985837237175 38.0 35.0 41.0 21.0 41.0 45 34.79185096415731 38.0 35.0 41.0 20.0 41.0 46 34.67850528379998 38.0 35.0 41.0 20.0 41.0 47 34.57704325089879 38.0 34.0 40.0 20.0 41.0 48 34.548861531757275 38.0 35.0 40.0 20.0 41.0 49 34.55567273123434 38.0 35.0 40.0 20.0 41.0 50 34.43059592548208 38.0 34.0 40.0 20.0 41.0 51 33.57906089988016 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 3.0 10 10.0 11 9.0 12 7.0 13 7.0 14 4.0 15 9.0 16 22.0 17 36.0 18 80.0 19 158.0 20 288.0 21 516.0 22 863.0 23 1418.0 24 2187.0 25 3317.0 26 4690.0 27 4948.0 28 4427.0 29 4009.0 30 4094.0 31 4614.0 32 5750.0 33 8279.0 34 14383.0 35 22023.0 36 15849.0 37 22728.0 38 38567.0 39 66126.0 40 51.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.41714783745506 19.59952064495043 22.741039328902932 20.24229218869158 2 38.10131822638632 23.638740603551586 22.093038457348296 16.166902712713803 3 27.735047390783308 23.23477502995969 33.77535679267894 15.254820786578058 4 24.503322802048153 22.887024730362786 35.56509423684497 17.044558230744087 5 20.67240440135091 34.22900098049897 29.371391219087045 15.727203399063077 6 22.573265061553546 31.20775683625667 33.38664342520972 12.832334676980064 7 68.03660529469441 6.080836692450158 20.817954025492973 5.0646039873624575 8 68.5007081381414 7.095326288266696 18.843882775901513 5.56008279769038 9 62.998147946399385 7.868395250027237 20.83015579039111 8.303301013182264 10 34.871772524240114 24.52206122671315 27.84965682536224 12.756509423684498 11 27.737662054690055 22.02287830918401 33.089007517158734 17.15045211896721 12 25.699531539383376 19.345026691360715 36.922976359080515 18.032465410175398 13 20.881141736572612 25.265061553546136 38.05294694411156 15.800849765769692 14 16.067109706939753 29.22409848567382 36.651487090096964 18.057304717289465 15 14.357991066564985 24.367360278897486 45.08726440788757 16.187384246649962 16 16.526418999891053 22.487416929948797 41.33391436975705 19.652249700403093 17 16.685477720884627 23.04956966989868 37.06591131931583 23.19904128990086 18 18.62032901187493 23.279660093692122 37.85248937792788 20.247521516505067 19 19.578167556378688 25.149580564331625 35.77906089988016 19.493190979409523 20 21.779278788539056 25.099901950103497 36.27802592875041 16.842793332607037 21 19.640047935504956 25.120383484039653 36.90728837564004 18.33228020481534 22 17.20274539710208 24.500708138141412 35.96905981043687 22.327486654319642 23 16.77263318444275 25.754875258742782 35.84442749754875 21.628064059265714 24 18.786360169953152 22.858699204706394 37.886044231397754 20.468896393942696 25 16.871990412899006 26.200675454842575 35.71500163416494 21.212332498093474 26 16.213095108399607 27.109271162435995 36.66194574572393 20.01568798344046 27 18.031158078222028 27.822202854341434 35.72110251661401 18.425536550822528 28 14.957184878527071 26.392853251988235 39.151105784943894 19.4988560845408 29 16.986164070160147 25.682536223989544 37.55485346987689 19.77644623597342 30 18.96284998365835 27.76250136180412 35.33979736354723 17.934851290990302 31 21.633729164396993 26.549297309075065 31.53502560191742 20.281947924610524 32 22.169735265279442 29.963612593964484 30.028979191633077 17.837672949123 33 21.805425427606494 26.528815775138902 31.734611613465518 19.931147183789083 34 19.446562806405925 27.402113519991282 31.484911210371504 21.66641246323129 35 20.15687983440462 28.6218542324872 30.02244253186622 21.198823401241963 36 22.186730580673274 27.613029741801938 31.376402658241638 18.823837019283147 37 19.89759233031921 28.183898028107635 33.118640374768496 18.799869266804663 38 21.453753132149473 28.09238479137161 29.42891382503541 21.02494825144351 39 21.285978864800086 26.16014816428805 31.718052075389476 20.83582089552239 40 22.068634927552022 24.597450702690928 32.25013618041181 21.083778189345246 41 19.107092275847045 26.61292079747249 30.408977012746487 23.871009913933978 42 22.043795620437955 24.967425645495155 32.29807168536878 20.690707048698115 43 21.778843011221266 24.908159930275627 32.04401350909685 21.268983549406254 44 20.025275084431858 26.629916112866326 30.578494389367034 22.766314413334786 45 19.68406144460181 26.895304499400808 29.547445255474454 23.873188800522932 46 23.058720993572283 26.093038457348293 30.148817954025493 20.699422595053925 47 19.503649635036496 25.602788974833864 33.50648218760214 21.38707920252751 48 20.42836910338817 24.429240658023748 32.254058176271926 22.888332062316156 49 20.14293496023532 22.69092493735701 35.1972981806297 21.968841921777972 50 19.14979845299052 23.240440135090967 33.98801612376076 23.621745288157754 51 19.302320514217236 23.844863274866544 30.584595271816102 26.268220939100118 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 484.0 1 526.5 2 569.0 3 4541.5 4 8514.0 5 5415.5 6 2317.0 7 2332.5 8 2348.0 9 2391.0 10 2434.0 11 2437.5 12 2441.0 13 2321.5 14 2202.0 15 2081.0 16 1960.0 17 1855.0 18 1750.0 19 1646.5 20 1543.0 21 1494.5 22 1446.0 23 1515.5 24 1585.0 25 1551.5 26 1893.0 27 2268.0 28 2483.5 29 2699.0 30 3216.0 31 3733.0 32 4208.0 33 4683.0 34 5263.5 35 5844.0 36 6295.5 37 6747.0 38 7715.0 39 8683.0 40 9755.0 41 10827.0 42 12212.0 43 13597.0 44 15603.0 45 17609.0 46 20707.0 47 23805.0 48 23583.0 49 23361.0 50 22717.5 51 22074.0 52 18391.5 53 14709.0 54 12430.0 55 10151.0 56 8436.5 57 6722.0 58 6290.5 59 5859.0 60 5652.5 61 5446.0 62 4581.5 63 3717.0 64 3016.5 65 2316.0 66 1801.0 67 1286.0 68 1038.0 69 790.0 70 737.5 71 685.0 72 493.5 73 302.0 74 257.5 75 156.0 76 99.0 77 73.0 78 47.0 79 41.0 80 35.0 81 44.0 82 53.0 83 27.0 84 1.0 85 2.0 86 3.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 229475.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.79431310600283 #Duplication Level Percentage of deduplicated Percentage of total 1 76.9738715258766 30.6312234448197 2 9.70454893887295 7.723717180520754 3 3.6093650758886526 4.308966118313542 4 1.9590880220766989 3.1184224861095977 5 1.1257364375041066 2.2398954134437306 6 0.8191156179504588 1.955768602244253 7 0.5727238879519919 1.5953807604314196 8 0.4018922884863882 1.279442205033228 9 0.36246961168663355 1.2981806296982243 >10 4.313497886506494 36.00653665976686 >50 0.11826803039926412 2.9040200457566185 >100 0.03175715631091351 2.389367033445909 >500 0.0054753717777437086 1.8211134110469551 >1k 0.0010950743555487418 0.483712822747576 >5k 0.0010950743555487418 2.2442531866216364 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5150 2.2442531866216364 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCG 1110 0.483712822747576 No Hit GAATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTC 999 0.43534154047281837 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGC 989 0.4309837672949123 No Hit GCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC 904 0.3939426952827106 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 647 0.281947924610524 No Hit CCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC 640 0.27889748338598974 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCC 449 0.19566401568798347 No Hit CTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGCT 443 0.1930493517812398 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC 382 0.16646693539601262 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 313 0.13639830046846063 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 284 0.12376075825253295 No Hit ACTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC 283 0.12332498093474235 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2030722300904238 0.0 2 0.0 0.0 0.0 1.2005665105131278 0.0 3 0.0 0.0 0.0 1.6633620220067546 0.0 4 0.0 0.0 0.0 2.3009042379344153 0.0 5 0.0 0.0 0.0 4.222682209391001 0.0 6 0.0 0.0 0.0 5.117768820132912 0.0 7 0.0 0.0 0.0 6.147510622072121 0.0 8 0.0 0.0 0.0 7.56335112757381 0.0 9 0.0 0.0 0.0 8.103715001634164 0.0 10 0.0 0.0 0.0 9.756618368013944 0.0 11 0.0 0.0 0.0 11.55550713585358 0.0 12 0.0 0.0 0.0 13.448959581653774 0.0 13 0.0 0.0 0.0 14.08170824708574 0.0 14 0.0 0.0 0.0 14.352325961433708 0.0 15 0.0 0.0 0.0 14.815993027562916 0.0 16 0.0 0.0 0.0 15.67185967970367 0.0 17 0.0 0.0 0.0 16.704651922867416 0.0 18 0.0 0.0 0.0 17.856411373787996 0.0 19 0.0 0.0 0.0 18.557141300795294 0.0 20 0.0 0.0 0.0 19.182481751824817 0.0 21 0.0 0.0 0.0 19.952936049678613 0.0 22 0.0 0.0 0.0 20.733849003159385 0.0 23 0.0 0.0 0.0 21.42412027453971 0.0 24 0.0 0.0 0.0 21.98932345571413 0.0 25 0.0 0.0 0.0 22.48175182481752 0.0 26 0.0 0.0 0.0 22.92580891164615 0.0 27 0.0 0.0 0.0 23.393397973635473 0.0 28 0.0 0.0 0.0 23.84355594291317 0.0 29 0.0 0.0 0.0 24.339470530558884 0.0 30 0.0 0.0 0.0 24.90772415295784 0.0 31 0.0 0.0 0.0 25.40930384573483 0.0 32 0.0 0.0 0.0 25.88125068090206 0.0 33 4.35777317790609E-4 0.0 0.0 26.314413334785925 0.0 34 4.35777317790609E-4 0.0 0.0 26.782002396775248 0.0 35 4.35777317790609E-4 0.0 0.0 27.28358208955224 0.0 36 4.35777317790609E-4 0.0 0.0 27.78603333696481 0.0 37 4.35777317790609E-4 0.0 0.0 28.204815339361588 0.0 38 4.35777317790609E-4 0.0 0.0 28.68722083015579 0.0 39 4.35777317790609E-4 0.0 0.0 29.160039219958602 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGA 20 7.0214743E-4 45.000004 13 ACTATTC 20 7.0214743E-4 45.000004 10 CGGGTCA 20 7.0214743E-4 45.000004 7 CGTGGCG 25 3.8810173E-5 45.000004 5 CGGCGGA 20 7.0214743E-4 45.000004 44 GTACCTA 20 7.0214743E-4 45.000004 24 CGGCGAA 40 6.7739165E-9 45.000004 31 CGAACAC 25 3.8810173E-5 45.000004 34 CCGATTC 20 7.0214743E-4 45.000004 11 CAACGAG 20 7.0214743E-4 45.000004 14 GCGAACA 25 3.8810173E-5 45.000004 33 GGCACCG 25 3.8810173E-5 45.000004 8 TTTCGCG 20 7.0214743E-4 45.000004 1 CGGCAGG 20 7.0214743E-4 45.000004 2 CCAATCA 20 7.0214743E-4 45.000004 41 CGACCCG 25 3.8810173E-5 45.000004 10 TTCGTTG 20 7.0214743E-4 45.000004 1 GTTAGCG 20 7.0214743E-4 45.000004 1 ATCACTA 20 7.0214743E-4 45.000004 25 TGTTGCG 20 7.0214743E-4 45.000004 1 >>END_MODULE