SRR2936033.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936033.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339737
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7039	2.071896790752847	No Hit
GCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	2289	0.6737564645593502	TruSeq Adapter, Index 19 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	1556	0.4580013363278065	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGCT	1495	0.4400462710861637	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	1331	0.3917736366660093	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG	872	0.256669129355943	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	857	0.25225394937848983	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCC	844	0.24842746006469713	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC	811	0.23871406411430018	No Hit
ACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	761	0.2239967975227897	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC	742	0.21840423621801572	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	434	0.12774587401431106	No Hit
AGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTG	380	0.11185122609547973	No Hit
ACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTG	377	0.11096819009998912	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGGCT	25	3.8849845E-5	45.000004	5
TTGTGCG	50	2.1827873E-11	45.000004	1
ACGGGTC	55	1.8189894E-12	45.000004	5
TGTGACG	25	3.8849845E-5	45.000004	1
TCTACGG	25	3.8849845E-5	45.000004	2
GCCCCCG	20	7.026263E-4	45.0	15
TGCCCCC	20	7.026263E-4	45.0	14
CAACGCT	20	7.026263E-4	45.0	15
ACGCATG	20	7.026263E-4	45.0	1
CCAGCGG	20	7.026263E-4	45.0	2
GCGCCAA	20	7.026263E-4	45.0	33
TTCGTGC	20	7.026263E-4	45.0	29
GTCTACG	20	7.026263E-4	45.0	1
CACGACG	20	7.026263E-4	45.0	26
CGCTGAT	20	7.026263E-4	45.0	18
TTATCCG	35	1.2085547E-7	45.0	1
CGTTATC	20	7.026263E-4	45.0	19
ACGATCT	20	7.026263E-4	45.0	12
CTAACGG	20	7.026263E-4	45.0	2
CCACTCG	20	7.026263E-4	45.0	35