##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936033.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 339737 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85829332689698 33.0 31.0 34.0 30.0 34.0 2 31.99308288470199 33.0 31.0 34.0 30.0 34.0 3 31.834471959191962 33.0 31.0 34.0 30.0 34.0 4 35.589873931894374 37.0 35.0 37.0 33.0 37.0 5 31.72935535428876 37.0 35.0 37.0 0.0 37.0 6 33.65855352817032 37.0 35.0 37.0 17.0 37.0 7 35.40438927758825 37.0 35.0 37.0 32.0 37.0 8 35.70003267233184 37.0 35.0 37.0 33.0 37.0 9 37.70262585470526 39.0 37.0 39.0 35.0 39.0 10 37.28776671366381 39.0 37.0 39.0 34.0 39.0 11 37.29930505067155 39.0 37.0 39.0 34.0 39.0 12 37.24160747872619 39.0 37.0 39.0 34.0 39.0 13 37.13886918410417 39.0 37.0 39.0 33.0 39.0 14 38.304335412392525 40.0 38.0 41.0 33.0 41.0 15 38.49637513723851 40.0 38.0 41.0 34.0 41.0 16 38.462790334876686 40.0 38.0 41.0 34.0 41.0 17 38.47294524882483 40.0 38.0 41.0 34.0 41.0 18 38.29710629104278 40.0 37.0 41.0 34.0 41.0 19 38.03469742771615 40.0 37.0 41.0 34.0 41.0 20 37.97935167497211 40.0 35.0 41.0 34.0 41.0 21 37.86689115403974 39.0 35.0 41.0 34.0 41.0 22 37.93988879633363 40.0 35.0 41.0 34.0 41.0 23 37.96940280275625 40.0 35.0 41.0 34.0 41.0 24 37.886135451834804 40.0 35.0 41.0 34.0 41.0 25 37.63677786052152 39.0 35.0 41.0 33.0 41.0 26 37.69447543246688 39.0 35.0 41.0 34.0 41.0 27 37.6305024180469 39.0 35.0 41.0 33.0 41.0 28 37.567636142074605 39.0 35.0 41.0 33.0 41.0 29 37.45731551170464 39.0 35.0 41.0 33.0 41.0 30 37.20615064005393 39.0 35.0 41.0 33.0 41.0 31 37.09482040519578 39.0 35.0 41.0 33.0 41.0 32 36.79161233542417 39.0 35.0 41.0 31.0 41.0 33 36.52210091924047 39.0 35.0 41.0 31.0 41.0 34 36.28177972961438 39.0 35.0 41.0 30.0 41.0 35 36.07529353588217 39.0 35.0 41.0 30.0 41.0 36 35.958520855838486 39.0 35.0 41.0 29.0 41.0 37 35.830047948854556 39.0 35.0 41.0 27.0 41.0 38 35.67044507957626 39.0 35.0 41.0 26.0 41.0 39 35.62962821241137 39.0 35.0 41.0 26.0 41.0 40 35.61698313695594 39.0 35.0 41.0 25.0 41.0 41 35.54747643029756 39.0 35.0 41.0 25.0 41.0 42 35.52347551194012 39.0 35.0 41.0 25.0 41.0 43 35.39683931982681 39.0 35.0 41.0 24.0 41.0 44 35.28315726576734 39.0 35.0 41.0 23.0 41.0 45 35.25474999779241 39.0 35.0 41.0 23.0 41.0 46 35.124858346309054 39.0 35.0 40.0 23.0 41.0 47 35.05126023953823 38.0 35.0 40.0 23.0 41.0 48 35.03793228291296 38.0 35.0 40.0 23.0 41.0 49 35.04358665673742 38.0 35.0 40.0 23.0 41.0 50 34.91969670657008 38.0 35.0 40.0 23.0 41.0 51 33.96415462548972 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 10.0 10 11.0 11 11.0 12 2.0 13 2.0 14 7.0 15 11.0 16 22.0 17 43.0 18 86.0 19 183.0 20 354.0 21 566.0 22 855.0 23 1535.0 24 2394.0 25 4058.0 26 5673.0 27 6339.0 28 6136.0 29 5813.0 30 6124.0 31 7001.0 32 8845.0 33 12299.0 34 20011.0 35 28628.0 36 26008.0 37 38140.0 38 65045.0 39 93461.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.842539964737426 20.990354303475925 25.79819095359057 18.368914778196075 2 36.80317422005845 23.149377312450515 24.75561978824797 15.29182867924306 3 27.060343736478508 22.887704312453458 35.196931744261 14.85502020680703 4 25.520917651006513 23.2291448973765 34.2771025822916 16.97283486932539 5 19.571904149386143 34.59411250467273 29.928150304500246 15.905833041440879 6 20.613592278733258 30.729358297742078 33.071758448446886 15.58529097507778 7 69.96941752002283 5.253181137173755 19.45387167132223 5.323529671481175 8 70.6110903434127 4.641531537630579 18.26471653072818 6.482661588228542 9 66.58827269328921 5.708239020183259 20.289223723056367 7.414264563471155 10 32.819798844400225 24.455387549781154 28.13911937763623 14.585694228182389 11 24.050074027850954 24.510135781501575 33.540944907384244 17.898845283263228 12 22.27222822359649 20.791965549822365 39.25359910754496 17.682207119036196 13 19.59074225062328 24.470693507036327 39.83463679257779 16.10392744976261 14 15.503168627497152 27.517462036810826 37.874296882588595 19.105072453103432 15 14.070884242811351 25.154163367546072 44.11736137070734 16.657591018935236 16 15.90759911343186 24.47687475900476 39.80284749674012 19.812678630823257 17 16.183695034688597 24.330879474416975 36.160324015341274 23.325101475553147 18 16.97548397731186 23.934985003105343 39.55765783532556 19.531873184257233 19 17.27777663310149 26.583209953581743 35.99666801084368 20.14234540247309 20 18.68356993792257 26.412195315788388 36.74930902433353 18.15492572195551 21 18.104592670212547 27.664340357394103 36.85174119981044 17.37932577258291 22 15.942626207919655 24.697633757877416 35.730579830869175 23.629160203333754 23 15.467258497013866 25.636889711747617 35.92837989385907 22.967471897379443 24 18.378039483482812 23.235031804013104 37.09575347989769 21.2911752326064 25 16.50865228102915 26.102249681371177 34.96469327744697 22.424404760152704 26 17.1570950470511 26.150816661123162 36.11852697822139 20.573561313604348 27 18.74008424163397 27.92100948675004 34.78484827969871 18.55405799191728 28 16.558690987440286 25.04260648678242 37.34094314131225 21.05775938446504 29 18.709177981791797 22.240438927758827 38.229866043439486 20.820517047009893 30 18.994398608335274 25.988632383284717 36.51589317619217 18.501075832187837 31 20.680997359722372 26.481660814100316 31.91086045970854 20.926481366468767 32 20.451408000894812 27.261381598118543 33.03614266329543 19.251067737691212 33 18.701525003164214 25.40170779161528 33.19626652381106 22.700500681409444 34 19.293747810806593 23.18646482426112 33.7899610581126 23.72982630681969 35 17.656599075166966 25.482064067204924 33.07323017510604 23.788106682522066 36 21.330323161739816 25.0726297106291 32.152812322472975 21.444234805158107 37 18.48959636424646 26.154348805105126 34.67388008959872 20.682174741049693 38 17.550929101039923 27.11362024153978 33.114732866894094 22.2207177905262 39 18.623229144897376 22.34110503124476 35.54720268913895 23.488463134718916 40 19.740858369856685 23.937634111091814 33.66545298274842 22.65605453630308 41 17.333407900817395 25.750507009834077 29.826012474355164 27.09007261499336 42 20.177961187624543 25.060561552024062 31.135849200999598 23.62562805935179 43 21.189037402461317 23.641228361938794 32.32353261493449 22.846201620665397 44 20.037558464341533 23.36572113134572 32.4774752234817 24.119245180831054 45 19.993112319235173 22.801755475559034 31.39428440234652 25.81084780285927 46 22.035868922136828 23.913203448549908 31.866119969270347 22.184807660042914 47 17.117947117917684 24.0271150919682 35.186335312315116 23.668602477799002 48 18.371563886182546 23.1696871403468 33.4187915946747 25.03995737879595 49 19.944250994151357 19.585444034650333 36.77226796021629 23.698037010982024 50 18.949069427233418 20.29952580967042 35.36382554740873 25.387579215687428 51 17.319279324889546 21.00065639008998 30.965717599201735 30.71434668581874 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 546.0 1 561.5 2 577.0 3 5858.0 4 11139.0 5 6983.5 6 2828.0 7 2913.0 8 2998.0 9 2999.0 10 3000.0 11 2920.5 12 2841.0 13 2807.5 14 2774.0 15 2582.0 16 2390.0 17 2296.5 18 2203.0 19 2145.5 20 2088.0 21 2071.0 22 2054.0 23 2256.5 24 2459.0 25 2463.5 26 2787.0 27 3106.0 28 3603.0 29 4100.0 30 4765.0 31 5430.0 32 6195.5 33 6961.0 34 7549.5 35 8138.0 36 9026.0 37 9914.0 38 11212.5 39 12511.0 40 13714.5 41 14918.0 42 17908.5 43 20899.0 44 24775.0 45 28651.0 46 33551.0 47 38451.0 48 42027.5 49 45604.0 50 41844.5 51 38085.0 52 29931.5 53 21778.0 54 17611.5 55 13445.0 56 11076.5 57 8708.0 58 7468.5 59 6229.0 60 5407.0 61 4585.0 62 4034.5 63 3484.0 64 2749.5 65 2015.0 66 1512.5 67 1010.0 68 789.5 69 569.0 70 474.5 71 380.0 72 283.5 73 187.0 74 140.5 75 79.5 76 65.0 77 46.5 78 28.0 79 22.5 80 17.0 81 10.5 82 4.0 83 4.0 84 4.0 85 2.5 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 339737.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.97117033132568 #Duplication Level Percentage of deduplicated Percentage of total 1 73.73908963206685 29.47437711760236 2 11.554451331312004 9.236898844977699 3 4.562893936113241 5.471526321724663 4 2.2261041909671704 3.5591995916970687 5 1.36761617143716 2.7332609468195113 6 0.9124323219030092 2.1882592652755295 7 0.6624382761410803 1.8534903218737415 8 0.5262400939868236 1.6827545945536129 9 0.4005518053884748 1.4409471995732468 >10 3.883388024160698 30.698787560154667 >50 0.10567521508007106 2.8194208040382445 >100 0.0509901387449294 3.347859129698215 >500 0.00443392510825473 1.4435316363891986 >1k 0.00295595007216982 1.9704930522513493 >5k 7.38987518042455E-4 2.079193613370896 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7039 2.071896790752847 No Hit GCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC 2289 0.6737564645593502 TruSeq Adapter, Index 19 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC 1556 0.4580013363278065 TruSeq Adapter, Index 19 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGCT 1495 0.4400462710861637 TruSeq Adapter, Index 13 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC 1331 0.3917736366660093 TruSeq Adapter, Index 19 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG 872 0.256669129355943 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 857 0.25225394937848983 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCC 844 0.24842746006469713 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC 811 0.23871406411430018 No Hit ACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC 761 0.2239967975227897 TruSeq Adapter, Index 13 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC 742 0.21840423621801572 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 434 0.12774587401431106 No Hit AGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTG 380 0.11185122609547973 No Hit ACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTG 377 0.11096819009998912 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.830359954906295E-4 0.0 0.0 0.4580013363278065 0.0 2 8.830359954906295E-4 0.0 0.0 2.2944218616164855 0.0 3 8.830359954906295E-4 0.0 0.0 3.0544215084020876 0.0 4 8.830359954906295E-4 0.0 0.0 3.9380461945563776 0.0 5 8.830359954906295E-4 0.0 0.0 6.391120190029346 0.0 6 8.830359954906295E-4 0.0 0.0 7.918478116896305 0.0 7 8.830359954906295E-4 0.0 0.0 9.492048260860606 0.0 8 8.830359954906295E-4 0.0 0.0 11.734076653411314 0.0 9 8.830359954906295E-4 0.0 0.0 12.49701975351522 0.0 10 8.830359954906295E-4 0.0 0.0 14.591286789487162 0.0 11 8.830359954906295E-4 0.0 0.0 17.312215036925622 0.0 12 8.830359954906295E-4 0.0 0.0 19.54070354421214 0.0 13 8.830359954906295E-4 0.0 0.0 20.274506456464852 0.0 14 8.830359954906295E-4 0.0 0.0 20.547953269735117 0.0 15 8.830359954906295E-4 0.0 0.0 21.06776712574727 0.0 16 8.830359954906295E-4 0.0 0.0 22.263692208973413 0.0 17 8.830359954906295E-4 0.0 0.0 23.679787600408552 0.0 18 8.830359954906295E-4 0.0 0.0 25.30486817744314 0.0 19 8.830359954906295E-4 0.0 0.0 26.27355866449636 0.0 20 8.830359954906295E-4 0.0 0.0 27.168074127928367 0.0 21 0.0011773813273208394 0.0 0.0 28.277461683596428 0.0 22 0.0011773813273208394 0.0 0.0 29.425997168397906 0.0 23 0.0011773813273208394 0.0 0.0 30.504478464223798 0.0 24 0.0011773813273208394 0.0 0.0 31.33806444396695 0.0 25 0.0011773813273208394 0.0 0.0 32.12220040796263 0.0 26 0.001471726659151049 0.0 0.0 32.805375923140545 0.0 27 0.001766071990981259 0.0 0.0 33.45793952380812 0.0 28 0.001766071990981259 0.0 0.0 34.07223823133777 0.0 29 0.001766071990981259 0.0 0.0 34.73186611996927 0.0 30 0.001766071990981259 0.0 0.0 35.49686963739599 0.0 31 0.001766071990981259 0.0 0.0 36.20800795909777 0.0 32 0.0020604173228114687 0.0 0.0 36.8932438915985 0.0 33 0.002354762654641679 0.0 0.0 37.50665956313266 0.0 34 0.002354762654641679 0.0 0.0 38.15627971048193 0.0 35 0.002354762654641679 0.0 0.0 38.81649628977709 0.0 36 0.002354762654641679 0.0 0.0 39.436976249275176 0.0 37 0.0026491079864718885 0.0 0.0 40.063343115409864 0.0 38 0.0026491079864718885 0.0 0.0 40.64290907378354 0.0 39 0.0026491079864718885 0.0 0.0 41.219531578838925 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGGCT 25 3.8849845E-5 45.000004 5 TTGTGCG 50 2.1827873E-11 45.000004 1 ACGGGTC 55 1.8189894E-12 45.000004 5 TGTGACG 25 3.8849845E-5 45.000004 1 TCTACGG 25 3.8849845E-5 45.000004 2 GCCCCCG 20 7.026263E-4 45.0 15 TGCCCCC 20 7.026263E-4 45.0 14 CAACGCT 20 7.026263E-4 45.0 15 ACGCATG 20 7.026263E-4 45.0 1 CCAGCGG 20 7.026263E-4 45.0 2 GCGCCAA 20 7.026263E-4 45.0 33 TTCGTGC 20 7.026263E-4 45.0 29 GTCTACG 20 7.026263E-4 45.0 1 CACGACG 20 7.026263E-4 45.0 26 CGCTGAT 20 7.026263E-4 45.0 18 TTATCCG 35 1.2085547E-7 45.0 1 CGTTATC 20 7.026263E-4 45.0 19 ACGATCT 20 7.026263E-4 45.0 12 CTAACGG 20 7.026263E-4 45.0 2 CCACTCG 20 7.026263E-4 45.0 35 >>END_MODULE