SRR2936032.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936032.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	671014
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7301	1.0880547946838666	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTC	3138	0.46765045140637906	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCG	2690	0.40088582354466523	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGC	2329	0.3470866479685968	No Hit
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	2198	0.32756395544653316	No Hit
CCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	975	0.14530248251154224	No Hit
CTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGCT	948	0.14127872145737647	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	850	0.12667395911262655	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCC	797	0.11877546519148631	No Hit
GAACTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCT	786	0.11713615513238174	No Hit
TCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	751	0.11192016858068536	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTACG	20	7.0311845E-4	45.000004	1
CGTGAAG	20	7.0311845E-4	45.000004	43
CGTCTAG	20	7.0311845E-4	45.000004	33
TATTGCG	20	7.0311845E-4	45.000004	1
CGTAGTC	20	7.0311845E-4	45.000004	3
GTAGACG	40	6.8084773E-9	45.000004	1
CACGTCT	20	7.0311845E-4	45.000004	40
CGTTATT	385	0.0	43.246754	1
CGTTTTT	3515	0.0	42.63158	1
ACGGGTC	75	0.0	42.0	5
CCCGTCG	40	3.4553523E-7	39.375004	40
CGCACGG	40	3.4553523E-7	39.375004	2
GCGCATT	35	6.2444014E-6	38.57143	21
CCGTCGA	35	6.2444014E-6	38.57143	41
TTGAGCG	70	0.0	38.57143	1
CGTCGAA	35	6.2444014E-6	38.57143	42
CACGGGA	235	0.0	38.29787	4
GCGATAA	65	9.094947E-12	38.07692	9
CGATGAA	315	0.0	37.857143	19
GTTTGCG	60	1.546141E-10	37.499996	1