SRR2936028.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936028.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	707733
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6937	0.9801719009852586	No Hit
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	6499	0.9182841551828161	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	6472	0.9144691571538984	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	6113	0.8637438129916226	No Hit
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	2916	0.41201978712311005	No Hit
GAACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	1532	0.2164658140852553	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT	1408	0.19894508239689263	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTC	1013	0.1431330741960598	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTA	953	0.13465530079846494	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACATCCGTT	942	0.13310104234223924	No Hit
CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT	824	0.11642808799363603	Illumina Single End Adapter 1 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	813	0.11487382953741028	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	806	0.11388475597435756	No Hit
TCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	735	0.10385272412053698	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	709	0.10017902231491255	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.0314476E-4	45.0	1
CAGCGCG	25	3.889281E-5	45.0	1
TCTTGCG	20	7.0314476E-4	45.0	1
TACCCGA	20	7.0314476E-4	45.0	22
CCCTCGA	25	3.889281E-5	45.0	41
GGTCGTT	20	7.0314476E-4	45.0	8
AACCCGC	20	7.0314476E-4	45.0	21
GCGAACC	25	3.889281E-5	45.0	33
GCGCGCA	20	7.0314476E-4	45.0	25
TTTCGCG	20	7.0314476E-4	45.0	1
CGCGCAT	20	7.0314476E-4	45.0	36
CTACGCG	20	7.0314476E-4	45.0	1
TCGCTCG	20	7.0314476E-4	45.0	30
ACTAACG	20	7.0314476E-4	45.0	1
CGTCGTG	20	7.0314476E-4	45.0	33
CGGTCTA	25	3.889281E-5	45.0	31
AATAGCG	20	7.0314476E-4	45.0	1
ATCGGGT	25	3.889281E-5	45.0	4
TACCGTA	20	7.0314476E-4	45.0	23
TGTTGCG	30	2.1643154E-6	44.999996	1