##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936028.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 707733 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02600980878382 33.0 31.0 34.0 30.0 34.0 2 32.14725468502952 33.0 31.0 34.0 30.0 34.0 3 32.07546348693646 33.0 31.0 34.0 30.0 34.0 4 35.72898395298792 37.0 35.0 37.0 33.0 37.0 5 31.848086778488497 37.0 35.0 37.0 0.0 37.0 6 33.73488872215935 37.0 35.0 37.0 17.0 37.0 7 35.44891081806274 37.0 35.0 37.0 32.0 37.0 8 35.68865377197333 37.0 35.0 37.0 33.0 37.0 9 37.714628256701324 39.0 37.0 39.0 35.0 39.0 10 37.32357824207717 39.0 37.0 39.0 34.0 39.0 11 37.23321082950774 39.0 37.0 39.0 34.0 39.0 12 37.265813520070424 39.0 37.0 39.0 34.0 39.0 13 37.214315285566734 39.0 37.0 39.0 34.0 39.0 14 38.491849327359326 40.0 38.0 41.0 34.0 41.0 15 38.58493104037822 40.0 38.0 41.0 34.0 41.0 16 38.59330849345728 40.0 38.0 41.0 34.0 41.0 17 38.521344913971795 40.0 38.0 41.0 34.0 41.0 18 38.39500206998967 40.0 38.0 41.0 34.0 41.0 19 38.225987766572985 40.0 37.0 41.0 34.0 41.0 20 38.1405219199896 40.0 37.0 41.0 34.0 41.0 21 38.16007449136892 40.0 37.0 41.0 34.0 41.0 22 38.20598446024136 40.0 37.0 41.0 34.0 41.0 23 38.16688073044496 40.0 37.0 41.0 34.0 41.0 24 38.141420563969746 40.0 36.0 41.0 34.0 41.0 25 37.970962213151005 40.0 36.0 41.0 34.0 41.0 26 37.9617157882987 40.0 36.0 41.0 34.0 41.0 27 37.92623630662976 40.0 36.0 41.0 34.0 41.0 28 37.85987653536009 40.0 36.0 41.0 33.0 41.0 29 37.83719283967259 40.0 36.0 41.0 33.0 41.0 30 37.678316540277194 40.0 36.0 41.0 33.0 41.0 31 37.64180135729152 40.0 36.0 41.0 33.0 41.0 32 37.4299107149165 40.0 36.0 41.0 33.0 41.0 33 37.22258817944055 40.0 36.0 41.0 32.0 41.0 34 36.992081759646645 40.0 36.0 41.0 31.0 41.0 35 36.92548602368407 40.0 36.0 41.0 31.0 41.0 36 36.790156739900496 40.0 35.0 41.0 30.0 41.0 37 36.748003837605424 40.0 36.0 41.0 30.0 41.0 38 36.641182479833496 40.0 35.0 41.0 30.0 41.0 39 36.5135623179928 40.0 35.0 41.0 30.0 41.0 40 36.524107255137174 40.0 35.0 41.0 30.0 41.0 41 36.407446028375105 40.0 35.0 41.0 29.0 41.0 42 36.36119553560453 40.0 35.0 41.0 30.0 41.0 43 36.26292118637961 40.0 35.0 41.0 29.0 41.0 44 36.29423666834809 40.0 35.0 41.0 29.0 41.0 45 36.31442931161893 40.0 35.0 41.0 29.0 41.0 46 36.19588743212483 39.0 35.0 41.0 29.0 41.0 47 36.07630278650282 39.0 35.0 41.0 28.0 41.0 48 36.08174410406184 39.0 35.0 41.0 28.0 41.0 49 36.06918569573554 39.0 35.0 41.0 28.0 41.0 50 35.952720870723844 39.0 35.0 41.0 28.0 41.0 51 35.069674580668135 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 6.0 9 27.0 10 20.0 11 12.0 12 11.0 13 17.0 14 16.0 15 20.0 16 41.0 17 81.0 18 170.0 19 347.0 20 765.0 21 1417.0 22 2508.0 23 3730.0 24 5233.0 25 6776.0 26 8810.0 27 9629.0 28 9305.0 29 9096.0 30 10081.0 31 12384.0 32 16049.0 33 22068.0 34 35719.0 35 49132.0 36 48836.0 37 76033.0 38 132835.0 39 246332.0 40 223.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.35245919011831 19.941277289599327 24.53891509933831 14.167348420944057 2 32.1978768829488 28.241158742067984 23.77563290110819 15.785331473875036 3 28.241723926961154 27.12039709890594 29.29904356586453 15.338835408268373 4 25.213604565563568 23.673899620337046 33.89738785671998 17.21510795737941 5 24.114178652118806 35.40191004234648 24.445094407071593 16.03881689846312 6 23.132169900230735 35.32885989490387 27.3849036289109 14.154066575954491 7 74.9901445884253 5.106869398487848 15.824187935280678 4.078798077806178 8 76.24245301547336 8.199278541483865 11.658633976372446 3.8996344666703404 9 71.17401618972127 7.008857860238253 12.690520295083033 9.126605654957448 10 35.55804236908552 33.647152245267634 19.485173080808725 11.309632304838125 11 25.214876231573207 23.979523351320342 32.99775480301187 17.807845614094582 12 23.39554606044935 21.2663532716434 34.721286134742904 20.616814533164344 13 22.464262652723555 23.64097760030972 36.59784127630053 17.2969184706662 14 17.807563021647994 28.789105495999195 32.97698425818776 20.426347224165045 15 16.397144120734797 26.303422335824383 38.081734213326214 19.217699330114606 16 19.08911976691775 26.031144513538294 33.27709743646262 21.602638283081333 17 18.870110620813215 26.68209621425029 33.424186804910896 21.023606360025603 18 19.577580810842505 25.4807957238111 33.77219940288216 21.169424062464234 19 19.69951945154458 27.63966071950863 31.465679853843188 21.195139975103604 20 22.206679637659967 26.691139172541057 34.183512708888806 16.918668480910174 21 21.009900626366157 29.057285727809784 32.448960271740894 17.483853374083164 22 20.047673345739142 23.668106475182025 33.83309807512155 22.45112210395728 23 19.63155596814053 27.54470965745557 32.93968205523834 19.88405231916556 24 19.803513471888408 26.209884236004257 32.890228377085705 21.096373915021626 25 18.444808988700544 30.68148581456566 30.8229233340822 20.050781862651593 26 17.670081796383663 28.491253057297033 32.368986609356924 21.469678536962387 27 20.362905219906377 28.21770356900131 30.874637751807533 20.544753459284788 28 16.427098920072964 28.559640429370965 34.36069817289854 20.652562477657536 29 19.004907217834972 25.20413771860292 34.055498330585124 21.735456732976985 30 18.00664940026818 28.344870169965226 31.948771641282804 21.699708788483793 31 19.939581734919805 27.791695455772164 29.340302063066154 22.928420746241873 32 21.968736797634136 27.715112902747226 30.220718830406383 20.09543146921226 33 19.71689888700965 25.953572886950305 29.473544401631692 24.855983824408355 34 18.912499487801192 26.96101495903116 29.97048321895404 24.156002334213607 35 20.69749467666479 25.024126330127324 29.883586041628696 24.3947929515792 36 19.345289819748405 29.705411504055906 29.596189523450228 21.353109152745457 37 18.58356187997451 26.80940411143751 32.462666005400344 22.144368003187644 38 18.836482119669423 27.946556116501565 29.232069156023528 23.984892607805484 39 19.564016373406357 26.071131344730286 31.73866415724574 22.626188124617617 40 21.253919203993597 24.440714224149502 30.47392166254788 23.83144490930902 41 18.750856608353715 25.90072809943863 30.414859841211307 24.93355545099635 42 20.597598246796462 25.778789458736558 31.65233216481357 21.971280129653415 43 20.285616185764972 26.350897866850914 30.529451078302127 22.834034869081986 44 19.532648611835253 25.53208625286655 30.810347970209108 24.124917165089094 45 18.78716973774008 25.934074008135838 29.854479019630286 25.424277234493797 46 21.829560017690287 27.13424412878868 28.498883053354866 22.537312800166166 47 18.092133615360595 25.885326811099667 33.47505344529646 22.54748612824328 48 19.88136769092299 25.422581679814282 31.029215820090343 23.666834809172386 49 19.396015163910686 24.057660162801508 33.90092026230231 22.6454044109855 50 19.306433358342765 24.442551075052315 31.738946749692325 24.512068816912596 51 18.678654238250868 24.427008490490056 29.459556075525654 27.43478119573342 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 295.0 1 626.5 2 958.0 3 6568.5 4 12179.0 5 8052.0 6 3925.0 7 3819.0 8 3713.0 9 3718.5 10 3724.0 11 3660.5 12 3597.0 13 3429.0 14 3261.0 15 3269.5 16 3278.0 17 3198.0 18 3118.0 19 3047.5 20 2977.0 21 3533.5 22 4090.0 23 4131.0 24 4172.0 25 4852.5 26 7123.0 27 8713.0 28 10411.0 29 12109.0 30 13155.5 31 14202.0 32 16462.5 33 18723.0 34 21322.5 35 23922.0 36 26595.0 37 29268.0 38 30676.5 39 32085.0 40 34511.5 41 36938.0 42 41343.5 43 45749.0 44 50471.0 45 55193.0 46 70189.5 47 85186.0 48 74892.5 49 64599.0 50 62308.5 51 60018.0 52 51875.5 53 43733.0 54 37946.0 55 32159.0 56 28862.0 57 25565.0 58 22840.0 59 20115.0 60 18142.0 61 16169.0 62 14035.5 63 11902.0 64 9434.0 65 6966.0 66 5410.0 67 3854.0 68 3077.0 69 2300.0 70 1852.0 71 1404.0 72 1142.5 73 881.0 74 700.5 75 426.5 76 333.0 77 242.5 78 152.0 79 123.5 80 95.0 81 62.5 82 30.0 83 23.0 84 16.0 85 10.5 86 5.0 87 5.0 88 5.0 89 3.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 707733.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.58037841553422 #Duplication Level Percentage of deduplicated Percentage of total 1 73.88915196498753 24.073365318222077 2 10.177953556102038 6.632031567070731 3 3.8004624677638708 3.7146151606134588 4 2.0660425848923305 2.6924979695360247 5 1.3139213557747806 2.140402748969706 6 0.8994940259679054 1.7583513449128034 7 0.7070722553182721 1.6125677151776177 8 0.5718707419406307 1.4905412141758452 9 0.45432140312056823 1.3321766912350124 >10 5.845009251419784 42.179686028720184 >50 0.23395535839866688 4.728000658017989 >100 0.032420779991528856 1.7427213723602026 >500 0.00481930513387591 1.2083001406363434 >1k 0.0017524745941366947 0.9804859617284162 >5k 0.0017524745941366947 3.714256108623543 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6937 0.9801719009852586 No Hit GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC 6499 0.9182841551828161 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG 6472 0.9144691571538984 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC 6113 0.8637438129916226 No Hit GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC 2916 0.41201978712311005 No Hit GAACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT 1532 0.2164658140852553 No Hit GAATGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT 1408 0.19894508239689263 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTC 1013 0.1431330741960598 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTA 953 0.13465530079846494 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACATCCGTT 942 0.13310104234223924 No Hit CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT 824 0.11642808799363603 Illumina Single End Adapter 1 (95% over 21bp) CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 813 0.11487382953741028 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG 806 0.11388475597435756 No Hit TCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC 735 0.10385272412053698 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC 709 0.10017902231491255 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.825924465864952E-4 0.0 0.0 0.12165604825548618 0.0 2 2.825924465864952E-4 0.0 0.0 0.8222027233434077 0.0 3 2.825924465864952E-4 0.0 0.0 1.0642431538447408 0.0 4 2.825924465864952E-4 0.0 0.0 1.5729095577004322 0.0 5 2.825924465864952E-4 0.0 0.0 3.3057664401688207 0.0 6 2.825924465864952E-4 0.0 0.0 4.024540328061571 0.0 7 2.825924465864952E-4 0.0 0.0 4.804212888193711 0.0 8 2.825924465864952E-4 0.0 0.0 5.819002363885816 0.0 9 2.825924465864952E-4 0.0 0.0 6.14030997565466 0.0 10 2.825924465864952E-4 0.0 0.0 7.895067772733503 0.0 11 2.825924465864952E-4 0.0 0.0 9.033491443807199 0.0 12 2.825924465864952E-4 0.0 0.0 10.924176207694144 0.0 13 2.825924465864952E-4 0.0 0.0 11.358944686767467 0.0 14 2.825924465864952E-4 0.0 0.0 11.545596997737848 0.0 15 2.825924465864952E-4 0.0 0.0 11.94984549257983 0.0 16 4.238886698797428E-4 0.0 0.0 12.507400389694984 0.0 17 4.238886698797428E-4 0.0 0.0 13.246662229965255 0.0 18 4.238886698797428E-4 0.0 0.0 13.984511108002595 0.0 19 4.238886698797428E-4 0.0 0.0 14.640690768976436 0.0 20 4.238886698797428E-4 0.0 0.0 15.130988663804006 0.0 21 4.238886698797428E-4 0.0 0.0 15.710585771752907 0.0 22 4.238886698797428E-4 0.0 0.0 16.396296343395036 0.0 23 5.651848931729904E-4 0.0 0.0 17.021390835244365 0.0 24 5.651848931729904E-4 0.0 0.0 17.490353000354652 0.0 25 5.651848931729904E-4 0.0 0.0 17.91254611555488 0.0 26 5.651848931729904E-4 0.0 0.0 18.320185719755898 0.0 27 5.651848931729904E-4 0.0 0.0 18.744780870752106 0.0 28 5.651848931729904E-4 0.0 0.0 19.176864721582856 0.0 29 5.651848931729904E-4 0.0 0.0 19.62689319277185 0.0 30 5.651848931729904E-4 0.0 0.0 20.157177918791408 0.0 31 5.651848931729904E-4 0.0 0.0 20.624161936775593 0.0 32 5.651848931729904E-4 0.0 0.0 21.04564857085935 0.0 33 5.651848931729904E-4 0.0 0.0 21.488894823330266 0.0 34 7.064811164662379E-4 0.0 0.0 21.920413489267844 0.0 35 7.064811164662379E-4 0.0 0.0 22.39531009575645 0.0 36 8.477773397594856E-4 0.0 0.0 22.84477338205227 0.0 37 8.477773397594856E-4 0.0 0.0 23.289150004309533 0.0 38 8.477773397594856E-4 0.0 0.0 23.7335266265668 0.0 39 8.477773397594856E-4 0.0 0.0 24.171827511222453 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 20 7.0314476E-4 45.0 1 CAGCGCG 25 3.889281E-5 45.0 1 TCTTGCG 20 7.0314476E-4 45.0 1 TACCCGA 20 7.0314476E-4 45.0 22 CCCTCGA 25 3.889281E-5 45.0 41 GGTCGTT 20 7.0314476E-4 45.0 8 AACCCGC 20 7.0314476E-4 45.0 21 GCGAACC 25 3.889281E-5 45.0 33 GCGCGCA 20 7.0314476E-4 45.0 25 TTTCGCG 20 7.0314476E-4 45.0 1 CGCGCAT 20 7.0314476E-4 45.0 36 CTACGCG 20 7.0314476E-4 45.0 1 TCGCTCG 20 7.0314476E-4 45.0 30 ACTAACG 20 7.0314476E-4 45.0 1 CGTCGTG 20 7.0314476E-4 45.0 33 CGGTCTA 25 3.889281E-5 45.0 31 AATAGCG 20 7.0314476E-4 45.0 1 ATCGGGT 25 3.889281E-5 45.0 4 TACCGTA 20 7.0314476E-4 45.0 23 TGTTGCG 30 2.1643154E-6 44.999996 1 >>END_MODULE