SRR2936027.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936027.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	875317
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	11286	1.2893614541931666	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC	9294	1.0617867583972436	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC	8789	1.0040933741718714	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8273	0.9451433023693131	No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	3781	0.4319577935764986	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	2251	0.25716397602240104	No Hit
GAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	1937	0.2212912579099915	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTA	1783	0.20369763182938294	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC	1698	0.19398686418748864	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGTGTATT	1596	0.18233394301721548	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	1339	0.15297315144113505	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	1333	0.15228768548994248	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	1289	0.1472609351811972	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1048	0.11972805280829689	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC	944	0.1078466429876262	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCC	888	0.10144896077649583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATGCGA	30	2.1649066E-6	45.000004	11
CGCATCG	20	7.032365E-4	45.0	21
TAGCACG	50	2.1827873E-11	45.0	1
TCTACGG	20	7.032365E-4	45.0	2
GTCGTTA	20	7.032365E-4	45.0	17
GTTCACG	50	2.1827873E-11	45.0	1
CCAACCG	20	7.032365E-4	45.0	40
TAATACG	385	0.0	42.662334	4
CCAATCG	65	0.0	41.53846	40
CGTTTTT	3400	0.0	41.42647	1
CGATGAA	1325	0.0	41.09434	19
CTTGGCG	55	6.002665E-11	40.909092	1
TACGAAT	110	0.0	40.909092	12
TACGGGT	100	0.0	40.5	4
AACGAGC	100	0.0	40.5	15
GCTAACG	50	1.0804797E-9	40.5	1
CGTTATT	560	0.0	40.17857	1
TACGGCT	1240	0.0	39.737904	7
AATACGG	415	0.0	39.578312	5
GCTACGA	115	0.0	39.130436	10