SRR2936026.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936026.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	937008
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6579	0.7021284770247426	No Hit
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	1683	0.17961426156446902	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1009	0.10768317879890034	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTT	25	3.8902526E-5	45.0	12
TATCTCG	25	3.8902526E-5	45.0	23
TATCGAC	20	7.032618E-4	45.0	30
CGTTTTT	2545	0.0	41.905697	1
TAGCACG	50	1.0804797E-9	40.5	1
TTGCACG	45	1.927583E-8	40.000004	1
TCGAAAG	45	1.927583E-8	40.000004	1
ACAACGA	220	0.0	39.886364	13
CCTCACG	40	3.4573168E-7	39.375	42
CGTTATT	350	0.0	39.214287	1
CACAACG	230	0.0	39.130436	12
CGTAAGG	145	0.0	38.793102	2
TGCACGG	210	0.0	38.57143	2
ATATCGT	35	6.2470535E-6	38.571426	33
ACGTAAG	35	6.2470535E-6	38.571426	1
GCGTAAG	95	0.0	37.894737	1
CGACAAT	30	1.13976086E-4	37.500004	20
AAAGTCG	30	1.13976086E-4	37.500004	33
GCCGACC	30	1.13976086E-4	37.500004	14
TATTCGC	30	1.13976086E-4	37.500004	26