SRR2936024.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936024.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394832
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCG	8018	2.0307371236373952	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	7663	1.9408254650079022	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6838	1.731875835798517	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGC	6428	1.628034201888398	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	1788	0.45285083275924953	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	1671	0.42321797625319124	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	1576	0.3991571098593832	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTC	1378	0.3490091988491308	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTA	1320	0.33431940673501637	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATT	1241	0.31431089678648133	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	800	0.2026178222636463	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCG	718	0.18184949548162255	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	574	0.14537828747416623	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGC	548	0.1387932082505977	No Hit
GAATATGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	535	0.13550066863881347	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCCCCCATCGAATGC	462	0.11701179235725574	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC	454	0.11498561413461929	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	438	0.11093325768934635	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATGC	25	3.8861384E-5	45.0	8
AGGTACG	20	7.027654E-4	45.0	1
CCGATCG	20	7.027654E-4	45.0	40
GCGAAAG	35	1.2092278E-7	45.0	1
TAAACGG	35	1.2092278E-7	45.0	2
CGACAGG	25	3.8861384E-5	45.0	2
CTGACGG	35	1.2092278E-7	45.0	2
TTGAGCG	20	7.027654E-4	45.0	1
TCGGATG	25	3.8861384E-5	45.0	21
CTAACGG	45	3.8380676E-10	45.0	2
TCGGAAC	20	7.027654E-4	45.0	35
CTCGGAT	25	3.8861384E-5	45.0	20
CTTGCGG	45	3.8380676E-10	45.0	2
TACGAAT	20	7.027654E-4	45.0	12
CCATACT	20	7.027654E-4	45.0	14
CGAATAC	45	3.8380676E-10	45.0	45
GACGGGT	40	6.7957444E-9	45.0	4
GCGATCG	20	7.027654E-4	45.0	33
ACTCGCG	20	7.027654E-4	45.0	1
CGTAAGC	45	3.8380676E-10	45.0	43