SRR2936022.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936022.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	799467
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8529	1.066835779337984	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	3499	0.43766659536916475	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	3203	0.40064192768431967	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	2907	0.36361725999947464	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1656	0.20713800569629515	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1298	0.16235817113151638	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCC	1225	0.15322708754707823	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1001	0.12520842010989822	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	20	7.0319977E-4	45.0	1
ACCGGTC	20	7.0319977E-4	45.0	39
TCCGCGG	20	7.0319977E-4	45.0	2
CGTGATA	25	3.8897364E-5	45.0	22
CGCATCG	20	7.0319977E-4	45.0	21
CGCATAT	20	7.0319977E-4	45.0	25
CACGAAC	20	7.0319977E-4	45.0	42
ATCGTTC	20	7.0319977E-4	45.0	22
TACGAAG	40	6.8102963E-9	45.0	1
TTACCGG	20	7.0319977E-4	45.0	2
TCGACGT	20	7.0319977E-4	45.0	26
TCGACGG	25	3.8897364E-5	45.0	2
CGTCATA	20	7.0319977E-4	45.0	38
TACGTAG	25	3.8897364E-5	45.0	1
GTACGCG	20	7.0319977E-4	45.0	1
CGGACTC	40	6.8102963E-9	45.0	6
CGTTTTT	4575	0.0	43.327873	1
CGTTATT	625	0.0	41.76	1
CGGTCGA	60	3.6379788E-12	41.249996	41
GCGATAC	55	6.002665E-11	40.909092	9