##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936021.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 828266 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14304704044353 33.0 31.0 34.0 30.0 34.0 2 32.27503000243883 34.0 31.0 34.0 30.0 34.0 3 32.167923106828 33.0 31.0 34.0 30.0 34.0 4 35.808667746834956 37.0 35.0 37.0 35.0 37.0 5 32.071969632944004 37.0 35.0 37.0 0.0 37.0 6 33.89262628189495 37.0 35.0 37.0 17.0 37.0 7 35.56774393733414 37.0 35.0 37.0 32.0 37.0 8 35.828598542014284 37.0 35.0 37.0 35.0 37.0 9 37.804072604694625 39.0 38.0 39.0 35.0 39.0 10 37.413586939461474 39.0 37.0 39.0 34.0 39.0 11 37.3901222554107 39.0 37.0 39.0 35.0 39.0 12 37.385729946659644 39.0 37.0 39.0 35.0 39.0 13 37.38404329044051 39.0 37.0 39.0 35.0 39.0 14 38.676064211255806 40.0 38.0 41.0 35.0 41.0 15 38.78939374548756 40.0 38.0 41.0 35.0 41.0 16 38.71322739313216 40.0 38.0 41.0 35.0 41.0 17 38.69775410315044 40.0 38.0 41.0 35.0 41.0 18 38.55207022864635 40.0 38.0 41.0 35.0 41.0 19 38.36788543776999 40.0 37.0 41.0 34.0 41.0 20 38.391510698253946 40.0 37.0 41.0 34.0 41.0 21 38.29753122789056 40.0 37.0 41.0 34.0 41.0 22 38.356783931732075 40.0 37.0 41.0 34.0 41.0 23 38.35745883568805 40.0 37.0 41.0 34.0 41.0 24 38.32934588646643 40.0 37.0 41.0 34.0 41.0 25 38.07088423284307 40.0 36.0 41.0 34.0 41.0 26 38.129062402658086 40.0 36.0 41.0 34.0 41.0 27 38.12882093433752 40.0 36.0 41.0 34.0 41.0 28 38.068486452419876 40.0 36.0 41.0 34.0 41.0 29 38.04096389324203 40.0 36.0 41.0 34.0 41.0 30 37.84819248888642 40.0 36.0 41.0 34.0 41.0 31 37.79321015229407 40.0 36.0 41.0 33.0 41.0 32 37.643263154590436 40.0 36.0 41.0 33.0 41.0 33 37.451487807057156 40.0 36.0 41.0 33.0 41.0 34 37.26133271195486 40.0 36.0 41.0 33.0 41.0 35 37.160827560228235 40.0 36.0 41.0 32.0 41.0 36 37.034917526495114 40.0 36.0 41.0 32.0 41.0 37 36.9865055429053 40.0 36.0 41.0 32.0 41.0 38 36.871672868378035 40.0 35.0 41.0 31.0 41.0 39 36.79968633265159 40.0 35.0 41.0 31.0 41.0 40 36.74424037688375 40.0 35.0 41.0 31.0 41.0 41 36.64122153994007 40.0 35.0 41.0 30.0 41.0 42 36.60872594070021 40.0 35.0 41.0 30.0 41.0 43 36.549566202162104 40.0 35.0 41.0 30.0 41.0 44 36.49311694552233 40.0 35.0 41.0 30.0 41.0 45 36.46783279767611 40.0 35.0 41.0 30.0 41.0 46 36.350753260425996 39.0 35.0 41.0 30.0 41.0 47 36.299185285886416 39.0 35.0 41.0 30.0 41.0 48 36.255852588419664 39.0 35.0 41.0 30.0 41.0 49 36.21237863198537 39.0 35.0 41.0 30.0 41.0 50 36.11907648026117 39.0 35.0 41.0 29.0 41.0 51 35.17572494826541 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 11.0 9 23.0 10 30.0 11 19.0 12 22.0 13 17.0 14 29.0 15 28.0 16 48.0 17 106.0 18 191.0 19 359.0 20 684.0 21 1101.0 22 1718.0 23 2655.0 24 4478.0 25 7014.0 26 9576.0 27 10560.0 28 10465.0 29 10345.0 30 11252.0 31 13441.0 32 17024.0 33 24898.0 34 41901.0 35 58765.0 36 57483.0 37 90144.0 38 156852.0 39 296778.0 40 244.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.60164971156609 21.272996839179683 24.532819166789412 14.592534282464811 2 35.953304856169396 23.413251298495894 24.401943337043896 16.231500508290814 3 31.219439165678658 22.94299174419812 29.963441696266656 15.874127393856563 4 27.410759345427678 24.628078419251786 29.78451367072897 18.17664856459157 5 21.984241777400012 36.47765331427343 25.122001868964798 16.41610303936175 6 23.9145395319861 33.93692364530235 28.354779744671397 13.793757078040148 7 76.83932456481372 6.259221071491526 12.600420637814421 4.301033725880333 8 78.74137052589386 5.644080524855542 11.72063081184064 3.8939181374099623 9 72.39280617579377 7.8990324364395015 13.800759659336492 5.907401728430239 10 36.762585932538585 27.966498685204993 21.620107549989978 13.650807832266446 11 27.025858842449164 25.330147561290694 29.05829769663369 18.585695899626447 12 25.63439764520094 22.44423892807383 32.442596943494 19.478766483231233 13 23.310868730576892 23.57696681983807 33.55371342056779 19.55845102901725 14 19.469107750408686 26.778957484672798 32.75747163350904 20.994463131409475 15 18.964438960430584 26.502476257627382 35.5284413461376 19.00464343580444 16 21.89465703047089 25.805840152801153 33.14019892160248 19.15930389512548 17 21.481383999826143 26.100914440529976 31.044857569911116 21.372843989732768 18 21.82125066101953 25.674843588895357 32.74902024228931 19.754885507795805 19 22.26398282677304 27.934262664409744 30.497931823834374 19.303822684982844 20 23.937237554119086 26.09717168156124 31.23984323876629 18.725747525553384 21 22.9770387773976 27.236177749660133 31.31578502558357 18.4709984473587 22 21.839602253382367 25.223418563601545 31.463805106089104 21.473174076926977 23 21.105055622227642 26.51141058548824 31.902070107912195 20.481463684371928 24 21.351836245843728 25.586224715248484 32.702054653939676 20.35988438496811 25 20.519857147341554 27.65741923488348 30.44939669140107 21.373326926373895 26 20.014946889042893 28.009842248746175 31.130216621230378 20.844994240980554 27 21.061470590365897 27.365121832841137 31.605426276099706 19.967981300693253 28 19.38435236989083 27.195852540125998 32.56405550873753 20.85573958124564 29 20.407574378279442 25.937561121668644 32.32765802290569 21.32720647714623 30 21.549478066225102 26.680800612363658 31.505216923065777 20.26450439834546 31 21.574349303243164 26.572502070590847 29.97020280924244 21.88294581692355 32 21.824148280866293 27.532097176510927 29.951971951039884 20.691782591582896 33 22.239594526396107 26.809503227224102 29.852124800486802 21.098777445892985 34 20.477962393723757 26.538937974032496 30.39216869942748 22.59093093281627 35 21.424518210333396 26.034993589016086 30.516162682036928 22.024325518613587 36 21.535231435311843 27.20478686798685 30.33180161928656 20.928180077414744 37 20.82628044613687 28.112587019146023 30.241975404036868 20.819157130680242 38 19.99526722091695 28.056928571256094 29.836912296291292 22.110891911535667 39 21.716091207414042 26.916352959073535 29.406495014886524 21.9610608186259 40 21.934016366722766 25.80970364593017 31.061398149869728 21.194881837477332 41 19.536718880166518 25.928023123006376 31.701772136004617 22.83348586082249 42 20.092337485783553 26.458166820803946 31.733283751838176 21.716211941574326 43 21.178582725839284 26.275858238778365 30.29847899104877 22.247080044333583 44 21.001707181026386 26.70905240586961 29.69287644307505 22.59636397002895 45 21.16337022164377 26.27935952942654 28.859207066328935 23.69806318260076 46 21.481504733986426 27.20659788039108 29.24096848114012 22.070928904482376 47 20.67427613834203 26.47289638835833 30.849026761933967 22.003800711365674 48 20.017844508889656 25.863188878935027 31.53105403336609 22.587912578809224 49 20.64288525666875 25.4012599816967 31.45800986639558 22.49784489523897 50 19.768166265426807 25.520062395414033 31.058862732503812 23.65290860665535 51 19.403911303856493 25.32121323342984 30.254773225026742 25.020102237686924 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 464.0 1 953.0 2 1442.0 3 8525.0 4 15608.0 5 10330.0 6 5052.0 7 4748.5 8 4445.0 9 4438.5 10 4432.0 11 4408.0 12 4384.0 13 4256.0 14 4128.0 15 3843.5 16 3559.0 17 3568.5 18 3578.0 19 3556.5 20 3535.0 21 4043.5 22 4552.0 23 4794.5 24 5037.0 25 5744.0 26 7800.5 27 9150.0 28 11487.0 29 13824.0 30 15424.5 31 17025.0 32 19614.0 33 22203.0 34 24846.5 35 27490.0 36 28950.0 37 30410.0 38 32232.5 39 34055.0 40 37793.5 41 41532.0 42 46193.0 43 50854.0 44 53476.5 45 56099.0 46 62201.5 47 68304.0 48 71351.0 49 74398.0 50 71170.0 51 67942.0 52 60564.5 53 53187.0 54 47589.0 55 41991.0 56 38450.5 57 34910.0 58 32699.5 59 30489.0 60 29384.5 61 28280.0 62 24745.0 63 21210.0 64 18270.5 65 15331.0 66 12193.5 67 9056.0 68 7325.5 69 5595.0 70 4589.5 71 3584.0 72 2722.0 73 1860.0 74 1620.5 75 1019.5 76 658.0 77 570.0 78 482.0 79 340.5 80 199.0 81 122.0 82 45.0 83 30.0 84 15.0 85 17.0 86 19.0 87 17.5 88 16.0 89 9.5 90 3.0 91 1.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 828266.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.266935606139306 #Duplication Level Percentage of deduplicated Percentage of total 1 74.2481202573421 24.700074354778863 2 9.339847494662422 6.214162103521925 3 3.66687857813552 3.659574406030979 4 2.050916432209037 2.7291081953548395 5 1.3415252741121055 2.2314217453947895 6 0.9935545481443495 1.983150910458294 7 0.7732095912113099 1.8005619576613157 8 0.616383411734103 1.6404149813480686 9 0.5313844087174819 1.590977781621979 >10 6.199932447414485 45.285913947839305 >50 0.19890729904179358 4.003612701656987 >100 0.035295931761043176 2.0044358927714168 >500 0.002573661690909381 0.6795610092895988 >1k 0.0011029978675325919 0.42038358332043757 >5k 3.6766595584419734E-4 1.0566464289511959 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8639 1.0430224106748316 No Hit GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC 1244 0.15019329539061121 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC 1134 0.13691253775960863 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1059 0.12785747573847048 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCG 994 0.12000975532015079 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTC 977 0.11795727459535947 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGC 858 0.10358990952182028 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.4146832056368364E-4 0.0 0.0 0.10165816295731081 0.0 2 3.6220248084552545E-4 0.0 0.0 0.4523908985760613 0.0 3 3.6220248084552545E-4 0.0 0.0 0.6797333223867694 0.0 4 3.6220248084552545E-4 0.0 0.0 0.9435374626025939 0.0 5 4.829366411273673E-4 0.0 0.0 1.7222727964204736 0.0 6 4.829366411273673E-4 0.0 0.0 2.378583691712566 0.0 7 4.829366411273673E-4 0.0 0.0 2.944706169274122 0.0 8 4.829366411273673E-4 0.0 0.0 3.7764437994557305 0.0 9 4.829366411273673E-4 0.0 0.0 4.122950839464616 0.0 10 4.829366411273673E-4 0.0 0.0 4.936578345603949 0.0 11 4.829366411273673E-4 0.0 0.0 6.02282358565968 0.0 12 4.829366411273673E-4 0.0 0.0 6.955132771356062 0.0 13 4.829366411273673E-4 0.0 0.0 7.32735618750498 0.0 14 4.829366411273673E-4 0.0 0.0 7.483948393390529 0.0 15 4.829366411273673E-4 0.0 0.0 7.748356204407763 0.0 16 4.829366411273673E-4 0.0 0.0 8.245298008127824 0.0 17 4.829366411273673E-4 0.0 0.0 8.85271156850577 0.0 18 4.829366411273673E-4 0.0 0.0 9.477148645483457 0.0 19 4.829366411273673E-4 0.0 0.0 9.922899165244015 0.0 20 4.829366411273673E-4 0.0 0.0 10.32373657737973 0.0 21 4.829366411273673E-4 0.0 0.0 10.818988102855846 0.0 22 4.829366411273673E-4 0.0 0.0 11.352633091301586 0.0 23 4.829366411273673E-4 0.0 0.0 11.88639881390761 0.0 24 4.829366411273673E-4 0.0 0.0 12.31114158977913 0.0 25 4.829366411273673E-4 0.0 0.0 12.694110346193131 0.0 26 4.829366411273673E-4 0.0 0.0 13.07031798963135 0.0 27 4.829366411273673E-4 0.0 0.0 13.427087433264193 0.0 28 4.829366411273673E-4 0.0 0.0 13.802570671740721 0.0 29 4.829366411273673E-4 0.0 0.0 14.195681097618397 0.0 30 4.829366411273673E-4 0.0 0.0 14.64155235153924 0.0 31 4.829366411273673E-4 0.0 0.0 15.067140266532732 0.0 32 4.829366411273673E-4 0.0 0.0 15.463269046417455 0.0 33 4.829366411273673E-4 0.0 0.0 15.861450307026969 0.0 34 4.829366411273673E-4 0.0 0.0 16.244781265921816 0.0 35 6.036708014092091E-4 0.0 0.0 16.64078931164626 0.0 36 7.244049616910509E-4 0.0 0.0 17.04597315355212 0.0 37 7.244049616910509E-4 0.0 0.0 17.430269985729222 0.0 38 7.244049616910509E-4 0.0 0.0 17.824587753209716 0.0 39 7.244049616910509E-4 0.0 0.0 18.237619315533898 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 20 7.032145E-4 45.0 4 ATGTCGC 20 7.032145E-4 45.0 27 ACGCTTT 20 7.032145E-4 45.0 5 CCGACCG 25 3.8898586E-5 45.0 15 CGTAAGG 50 2.1827873E-11 45.0 2 ATGCGCG 30 2.1647647E-6 44.999996 1 CGTTTTT 4040 0.0 43.217823 1 CGTTAGG 95 0.0 42.63158 2 CGTTATT 555 0.0 41.756756 1 GCGTTAG 85 0.0 39.705883 1 ATGGGCG 230 0.0 39.130436 5 CGGGTTA 35 6.246177E-6 38.571426 6 CGCTGTT 35 6.246177E-6 38.571426 13 CCGACGG 35 6.246177E-6 38.571426 2 CTTACGG 65 9.094947E-12 38.07692 2 CCGCTCG 30 1.1396469E-4 37.499996 19 ACGGGCG 120 0.0 37.499996 5 TTAACGG 60 1.546141E-10 37.499996 2 TATAGCG 60 1.546141E-10 37.499996 1 GCGTAAG 30 1.1396469E-4 37.499996 1 >>END_MODULE