SRR2936019.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936019.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608940
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9680	1.5896475843268632	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG	3256	0.534699642000854	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC	3072	0.504483200315302	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	2886	0.4739383190462115	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	2336	0.3836174335730942	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1645	0.27014155746050517	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	1353	0.22218937826386834	No Hit
CTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGCT	1196	0.19640687095608764	Illumina Single End Adapter 1 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1173	0.19262981574539362	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCC	1065	0.1748940782343088	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	707	0.11610339278089796	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCT	706	0.11593917298912866	No Hit
TCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	689	0.11314743652905049	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	685	0.11249055736197328	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCT	641	0.10526488652412389	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	100	0.0	45.000004	4
CCGATCG	25	3.8886366E-5	45.000004	40
ACGGGTA	25	3.8886366E-5	45.000004	5
ACGTCGC	25	3.8886366E-5	45.000004	20
ACAACGA	40	6.8066583E-9	45.0	13
AATCACG	20	7.030671E-4	45.0	35
CGACGGT	20	7.030671E-4	45.0	28
CGCCTAA	20	7.030671E-4	45.0	30
GCCGATT	20	7.030671E-4	45.0	9
CGATCGA	45	3.8380676E-10	45.0	41
GATTACG	20	7.030671E-4	45.0	1
CGTATGG	65	0.0	44.999996	2
ACGATCG	30	2.1638134E-6	44.999996	40
CGTTATT	390	0.0	44.423077	1
CGTTTTT	3575	0.0	43.174824	1
ACTATGC	280	0.0	41.785717	8
AATGCGG	70	0.0	41.785717	2
CGTGTAC	275	0.0	41.727272	18
GCGTTAG	60	3.6379788E-12	41.249996	1
ACGGGCG	60	3.6379788E-12	41.249996	5