SRR2936018.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936018.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	736418
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6451	0.8759970560198149	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC	2418	0.32834612950796965	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCG	2327	0.3159890171071321	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGC	2248	0.30526141403387747	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	1469	0.1994791001849493	Illumina Single End Adapter 1 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	795	0.10795499295237217	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	759	0.10306646496962323	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAC	20	7.031634E-4	45.0	15
ATTGTCG	20	7.031634E-4	45.0	2
CACGATA	25	3.889435E-5	45.0	27
GGACGTA	20	7.031634E-4	45.0	8
CGTGTAT	25	3.889435E-5	45.0	20
TATAGCG	25	3.889435E-5	45.0	1
CGATCGA	35	1.2111377E-7	45.0	41
CGGTCTA	30	2.1644355E-6	44.999996	31
CCCGCTA	30	2.1644355E-6	44.999996	34
AATCGTT	30	2.1644355E-6	44.999996	22
CGTTTTT	2885	0.0	42.58232	1
TCACGAC	50	1.0804797E-9	40.5	25
GCCGATC	50	1.0804797E-9	40.5	39
GCGATAA	50	1.0804797E-9	40.5	9
CGCCGAT	40	3.4559707E-7	39.375	38
TAATACG	75	0.0	39.000004	4
CGTTATT	425	0.0	38.647057	1
CGGGTAT	70	0.0	38.571426	6
CGACGGT	35	6.2452327E-6	38.571426	28
CGTTGAT	35	6.2452327E-6	38.571426	25