##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936013.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1041074 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.07619919429359 33.0 31.0 34.0 30.0 34.0 2 32.232290884221484 34.0 31.0 34.0 30.0 34.0 3 32.06571482910917 33.0 31.0 34.0 30.0 34.0 4 35.76801360902299 37.0 35.0 37.0 35.0 37.0 5 32.073113918895295 37.0 35.0 37.0 0.0 37.0 6 33.8844318463433 37.0 35.0 37.0 17.0 37.0 7 35.559440539289234 37.0 35.0 37.0 32.0 37.0 8 35.827436858475 37.0 35.0 37.0 35.0 37.0 9 37.81669026409266 39.0 38.0 39.0 35.0 39.0 10 37.440614211861984 39.0 37.0 39.0 34.0 39.0 11 37.3921892199786 39.0 37.0 39.0 34.0 39.0 12 37.396931438111025 39.0 37.0 39.0 35.0 39.0 13 37.38567863571658 39.0 37.0 39.0 35.0 39.0 14 38.65091434422529 40.0 38.0 41.0 35.0 41.0 15 38.78376657182871 40.0 38.0 41.0 35.0 41.0 16 38.70108368857545 40.0 38.0 41.0 35.0 41.0 17 38.6991040022131 40.0 38.0 41.0 35.0 41.0 18 38.49341257201697 40.0 38.0 41.0 35.0 41.0 19 38.2350716663753 40.0 37.0 41.0 34.0 41.0 20 38.184440299152605 40.0 36.0 41.0 34.0 41.0 21 38.07450094805941 40.0 36.0 41.0 34.0 41.0 22 38.12360216468762 40.0 36.0 41.0 34.0 41.0 23 38.136434105548695 40.0 36.0 41.0 34.0 41.0 24 38.076256827084336 40.0 35.0 41.0 34.0 41.0 25 37.80444041441819 40.0 35.0 41.0 34.0 41.0 26 37.86404520716107 40.0 35.0 41.0 34.0 41.0 27 37.85145628456767 40.0 35.0 41.0 34.0 41.0 28 37.780926235791114 40.0 35.0 41.0 34.0 41.0 29 37.72796170108945 40.0 35.0 41.0 33.0 41.0 30 37.502377352618545 40.0 35.0 41.0 33.0 41.0 31 37.38559891035604 40.0 35.0 41.0 33.0 41.0 32 37.140401162645496 40.0 35.0 41.0 33.0 41.0 33 36.823134570645315 40.0 35.0 41.0 31.0 41.0 34 36.50521960974916 40.0 35.0 41.0 30.0 41.0 35 36.33347773549239 40.0 35.0 41.0 30.0 41.0 36 36.15493327083377 40.0 35.0 41.0 29.0 41.0 37 36.07209285795246 40.0 35.0 41.0 28.0 41.0 38 35.94234223503805 39.0 35.0 41.0 27.0 41.0 39 35.83647752225106 39.0 35.0 41.0 26.0 41.0 40 35.747105393084446 39.0 35.0 41.0 26.0 41.0 41 35.599011213419985 39.0 35.0 41.0 25.0 41.0 42 35.54139283086505 39.0 35.0 41.0 24.0 41.0 43 35.43129691069031 39.0 35.0 41.0 24.0 41.0 44 35.34832298184375 39.0 35.0 41.0 23.0 41.0 45 35.296709936085236 39.0 35.0 41.0 23.0 41.0 46 35.14478509692875 39.0 35.0 41.0 23.0 41.0 47 35.06463325373605 38.0 35.0 41.0 23.0 41.0 48 35.000055711697726 38.0 35.0 41.0 23.0 41.0 49 34.955538223027375 38.0 35.0 41.0 23.0 41.0 50 34.842127456837844 38.0 35.0 40.0 23.0 41.0 51 33.85935870072637 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 21.0 9 51.0 10 48.0 11 41.0 12 23.0 13 26.0 14 22.0 15 47.0 16 89.0 17 181.0 18 347.0 19 657.0 20 1174.0 21 1783.0 22 2799.0 23 4386.0 24 7287.0 25 12256.0 26 17571.0 27 19408.0 28 18366.0 29 16823.0 30 17175.0 31 19566.0 32 23987.0 33 33111.0 34 55004.0 35 75031.0 36 80082.0 37 119205.0 38 192986.0 39 321277.0 40 242.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.8995863886717 19.95544985274822 23.32840893154569 19.816554827034388 2 39.095875989603044 21.731116135836643 22.90682506719023 16.26618280737008 3 29.275248445355466 21.51816297400569 33.35497764808265 15.851610932556188 4 25.521912947590664 23.622432219035343 32.96758923957375 17.88806559380025 5 21.06459291078252 35.08482586252274 28.01577985810807 15.834801368586671 6 23.57613387713073 30.7942567002922 31.276066830984156 14.353542591592912 7 74.02153929499728 5.44860403775332 16.06235483740829 4.467501829841106 8 75.81507174321902 4.465580736816019 15.774671156901432 3.9446763630635284 9 70.22478709486549 6.800381144856177 17.65638177497469 5.318449985303638 10 36.08369818091701 26.285835589016727 24.098767234605802 13.531698995460456 11 25.477055425454864 23.67900840862417 32.24717935516592 18.596756810755046 12 22.79472928917637 21.060558615429837 36.103677548377924 20.041034547015872 13 21.525943400757296 21.636982577607355 37.79885003371518 19.038223987920166 14 19.23023723577767 24.04814643339474 37.29590787974726 19.425708451080325 15 18.39360122335204 23.52522491196591 38.29650918186411 19.784664682817937 16 21.573778617081977 23.69149551328724 36.072747950674014 18.661977918956772 17 21.587034158955078 23.886198291379866 34.23791200241289 20.288855547252165 18 21.755706126557765 23.827797063417204 35.16320645794631 19.253290352078718 19 22.013901029129535 25.552170162735788 33.125310976933434 19.308617831201243 20 22.838722319450873 25.575607497641855 33.140679721134134 18.44499046177313 21 22.642770830891944 24.653386790948577 34.30111596293827 18.402726415221203 22 22.079986629192547 22.718461896080395 33.75600581706968 21.44554565765738 23 21.117230859669917 23.973319860067583 34.15127070698144 20.758178573281054 24 20.760772048864922 23.833560342492465 34.768517895942075 20.637149712700538 25 20.90379742458269 25.05038066458292 33.25488870147559 20.790933209358798 26 20.609101754534258 25.503854673154834 33.41779739000302 20.469246182307884 27 20.577019501015297 24.290780482463305 34.42118427700625 20.711015739515155 28 19.32110493586431 24.769805028268884 34.99760823918376 20.91148179668304 29 20.52111569398525 23.599283048083038 34.348663015309185 21.530938242622522 30 21.331048513362163 23.81982452736309 34.09911303135031 20.75001392792443 31 22.03340012333417 24.39864985582197 32.73821073237829 20.829739288465564 32 22.080659011751326 25.228562042659792 32.42516862394027 20.265610321648605 33 21.22433179581855 24.423528010496852 32.61814241831032 21.733997775374277 34 20.563763959142193 25.67752148262275 32.39577590065644 21.362938657578614 35 21.253724519102388 26.923926637299555 31.2704956612114 20.55185318238665 36 22.034456724497968 26.707995781279713 30.25865596489779 20.998891529324524 37 21.150081550398912 27.072523182790082 31.082228544752823 20.695166722058183 38 21.034431750288643 27.685255803141757 29.37399262684497 21.906319819724633 39 21.285038335411315 26.270370790164773 29.37005438614354 23.074536488280373 40 22.50887064704334 25.162188278643015 30.72039067347758 21.60855040083606 41 21.09888442128033 25.588670930212455 30.44298484065494 22.869459807852273 42 22.362195194577907 24.87344799697236 30.525207622128686 22.23914918632105 43 21.326341835450698 24.3116243417855 31.82866923965059 22.533364583113208 44 21.235378080712803 25.01167064012741 30.96369710510492 22.78925417405487 45 21.548516243802073 25.00235333895573 30.430978009248143 23.01815240799405 46 21.832645902212523 25.03981465294494 30.35740014638729 22.77013929845525 47 21.081690638705798 25.457076057993955 31.156190626218695 22.305042677081552 48 20.8513515849978 24.89092994350065 31.399112839241017 22.85860563226053 49 21.75080733934379 24.04017389734063 31.608896197580577 22.600122565735 50 20.67317020692093 24.30586106271024 31.888703396684576 23.132265333684256 51 20.64137611735573 24.005017894981528 30.757563823513024 24.596042164149715 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 706.0 1 1283.5 2 1861.0 3 17979.5 4 34098.0 5 21877.5 6 9657.0 7 9382.0 8 9107.0 9 9054.0 10 9001.0 11 8890.0 12 8779.0 13 8366.5 14 7954.0 15 7586.5 16 7219.0 17 6798.0 18 6377.0 19 6289.5 20 6202.0 21 6089.5 22 5977.0 23 6042.0 24 6107.0 25 6909.5 26 8934.0 27 10156.0 28 11652.5 29 13149.0 30 14379.0 31 15609.0 32 18632.0 33 21655.0 34 24756.0 35 27857.0 36 30581.5 37 33306.0 38 35908.5 39 38511.0 40 42292.5 41 46074.0 42 49500.5 43 52927.0 44 57580.5 45 62234.0 46 71133.0 47 80032.0 48 83864.5 49 87697.0 50 85233.5 51 82770.0 52 74643.5 53 66517.0 54 60205.5 55 53894.0 56 50679.5 57 47465.0 58 44732.0 59 41999.0 60 39543.0 61 37087.0 62 33154.0 63 29221.0 64 25432.0 65 21643.0 66 19281.0 67 16919.0 68 14127.5 69 11336.0 70 9800.0 71 8264.0 72 7183.5 73 6103.0 74 5001.0 75 2945.0 76 1991.0 77 1465.5 78 940.0 79 729.5 80 519.0 81 435.0 82 351.0 83 239.0 84 127.0 85 77.0 86 27.0 87 20.0 88 13.0 89 12.0 90 11.0 91 9.5 92 8.0 93 5.5 94 3.0 95 2.0 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1041074.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.297251790255686 #Duplication Level Percentage of deduplicated Percentage of total 1 74.20681570545298 26.192966585084736 2 9.41628000883857 6.64737612799052 3 3.9159096630498302 4.146625480936954 4 2.1138184406013174 2.9844792694716133 5 1.3866649285879125 2.447273056654223 6 0.9853436998227738 2.086795480355194 7 0.7955427058370197 1.9656329838481417 8 0.6625654898089043 1.8709392737055186 9 0.5599914004381568 1.7789541715479165 >10 5.800020776286571 41.85941899519246 >50 0.12760145689218003 2.760026702953426 >100 0.025083394846380534 1.5890554790904072 >500 0.0016358735765529173 0.39610903288629495 >1k 0.0024538103648293758 1.2817726455326928 >5k 0.0 0.0 >10k+ 2.7264559609215287E-4 1.9925747147499364 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20705 1.98881155422189 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2452 0.2355260048757341 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCC 1914 0.1838486025008789 No Hit CTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGCT 1458 0.14004768152888267 Illumina PCR Primer Index 11 (96% over 25bp) CGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTG 1413 0.13572522222243566 Illumina PCR Primer Index 11 (95% over 23bp) CGTTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTT 1349 0.1295777245421555 No Hit CCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC 1295 0.12439077337441912 Illumina PCR Primer Index 11 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC 1250 0.12006831406797211 Illumina PCR Primer Index 11 (95% over 24bp) CGTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTC 1097 0.10537195242605232 Illumina PCR Primer Index 11 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCT 1091 0.10479562451852606 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.60546512543777E-5 0.0 0.0 0.147251780372961 0.0 2 9.60546512543777E-5 0.0 0.0 0.49410512605251883 0.0 3 9.60546512543777E-5 0.0 0.0 0.7974457147138436 0.0 4 9.60546512543777E-5 0.0 0.0 1.1100075498955886 0.0 5 9.60546512543777E-5 0.0 0.0 1.9208048611337907 0.0 6 9.60546512543777E-5 0.0 0.0 2.7947100782461187 0.0 7 2.8816395376313306E-4 0.0 0.0 3.5708316603814905 0.0 8 2.8816395376313306E-4 0.0 0.0 4.709079277745866 0.0 9 2.8816395376313306E-4 0.0 0.0 5.278491250381817 0.0 10 2.8816395376313306E-4 0.0 0.0 6.144231822137523 0.0 11 2.8816395376313306E-4 0.0 0.0 7.296887637190055 0.0 12 2.8816395376313306E-4 0.0 0.0 8.1459146996275 0.0 13 2.8816395376313306E-4 0.0 0.0 8.529364867434976 0.0 14 2.8816395376313306E-4 0.0 0.0 8.715710890868468 0.0 15 2.8816395376313306E-4 0.0 0.0 8.954406699235598 0.0 16 3.842186050175108E-4 0.0 0.0 9.382138061271341 0.0 17 3.842186050175108E-4 0.0 0.0 9.931378557143873 0.0 18 3.842186050175108E-4 0.0 0.0 10.511740760022823 0.0 19 4.8027325627188845E-4 0.0 0.0 10.900954206905562 0.0 20 5.763279075262661E-4 0.0 0.0 11.2638486793446 0.0 21 5.763279075262661E-4 0.0 0.0 11.72750448094948 0.0 22 5.763279075262661E-4 0.0 0.0 12.24091659190413 0.0 23 5.763279075262661E-4 0.0 0.0 12.735117772607904 0.0 24 5.763279075262661E-4 0.0 0.0 13.14383031369528 0.0 25 5.763279075262661E-4 0.0 0.0 13.506724786134319 0.0 26 5.763279075262661E-4 0.0 0.0 13.841091027150808 0.0 27 5.763279075262661E-4 0.0 0.0 14.179395508868726 0.0 28 6.723825587806438E-4 0.0 0.0 14.527977838270862 0.0 29 6.723825587806438E-4 0.0 0.0 14.89346578629377 0.0 30 6.723825587806438E-4 0.0 0.0 15.325423552984706 0.0 31 7.684372100350216E-4 0.0 0.0 15.70531969869577 0.0 32 7.684372100350216E-4 0.0 0.0 16.093188380460948 0.0 33 7.684372100350216E-4 0.0 0.0 16.479135969201035 0.0 34 7.684372100350216E-4 0.0 0.0 16.85730313118952 0.0 35 7.684372100350216E-4 0.0 0.0 17.24565208621097 0.0 36 7.684372100350216E-4 0.0 0.0 17.612004526095166 0.0 37 7.684372100350216E-4 0.0 0.0 17.985176846218426 0.0 38 7.684372100350216E-4 0.0 0.0 18.36776252216461 0.0 39 7.684372100350216E-4 0.0 0.0 18.784927872562374 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 9005 0.0 44.000557 1 CGTTATT 1215 0.0 42.59259 1 TCGATAG 45 1.9279469E-8 40.0 1 TATTACG 45 1.9279469E-8 40.0 1 TGCGTAG 45 1.9279469E-8 40.0 1 GCGTAAG 130 0.0 39.80769 1 CTGACGG 85 0.0 39.705883 2 ACGTGCG 40 3.457808E-7 39.375 1 TAACGGG 265 0.0 39.056602 3 GGTACGA 35 6.247723E-6 38.571426 8 CACGTAG 35 6.247723E-6 38.571426 1 TGTAACG 35 6.247723E-6 38.571426 1 TACGGGA 535 0.0 38.271027 4 ATTGTCG 30 1.1398478E-4 37.500004 1 TAGCCGT 30 1.1398478E-4 37.500004 44 GTTTTTT 10920 0.0 37.190933 2 ATTACGG 85 0.0 37.058823 2 ACGGGAT 615 0.0 36.951218 5 TCACGAC 55 2.748493E-9 36.81818 25 CGGTCTA 55 2.748493E-9 36.81818 31 >>END_MODULE