SRR2936011.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936011.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	712204
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9705	1.3626713694390933	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	1798	0.2524557570583709	TruSeq Adapter, Index 16 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTC	1682	0.23616828886105665	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCG	1619	0.22732250871941184	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGC	1401	0.19671330124514885	No Hit
CTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGCT	1264	0.17747723966728635	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1137	0.1596452701753992	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCC	1116	0.15669667679485091	No Hit
CCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	944	0.13254629291607462	TruSeq Adapter, Index 16 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	735	0.10320076831918945	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTGA	25	3.889305E-5	45.000004	30
TGGAACG	25	3.889305E-5	45.000004	1
AGGGCCG	50	2.1827873E-11	45.000004	6
CCGTTAG	25	3.889305E-5	45.000004	1
TAGTACG	25	3.889305E-5	45.000004	1
CTGTCGT	20	7.0314767E-4	45.0	28
GGTACGA	20	7.0314767E-4	45.0	8
TTGCGAG	35	1.211065E-7	45.0	1
CCGACCG	20	7.0314767E-4	45.0	15
GTATACG	40	6.8084773E-9	45.0	1
TATCACG	30	2.1643355E-6	44.999996	1
CGACGCG	30	2.1643355E-6	44.999996	13
CGTTTTT	4740	0.0	43.860756	1
CGTTATT	595	0.0	43.487396	1
TATACGG	70	0.0	41.785713	2
TAATACG	60	3.6379788E-12	41.249996	4
CGTAAGG	110	0.0	40.90909	2
TTGCGCG	50	1.0804797E-9	40.500004	1
CAACGAC	40	3.4557524E-7	39.375	10
CGCAATC	40	3.4557524E-7	39.375	18