SRR2936009.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936009.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	922092
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11470	1.243910585928519	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	1878	0.20366731302299554	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT	1709	0.1853394238318953	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCG	1353	0.14673156257726996	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1334	0.14467103065637701	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	1234	0.13382612580957215	No Hit
GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	1226	0.13295853342182776	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT	1206	0.13078955245246676	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	1091	0.11831791187864119	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGC	1084	0.11755876853936484	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACT	20	7.0325605E-4	45.0	17
TGTATCG	20	7.0325605E-4	45.0	40
CGTACTT	20	7.0325605E-4	45.0	10
GGACCGT	30	2.165034E-6	44.999996	8
CGTTTTT	6245	0.0	43.16253	1
CGTTATT	835	0.0	42.574852	1
ATTACGG	80	0.0	42.1875	2
TTACGGG	270	0.0	41.666664	3
AGTAACG	50	1.0804797E-9	40.500004	1
CGCGGAT	40	3.4572258E-7	39.375	23
TCGTGCG	40	3.4572258E-7	39.375	1
TAACGGG	190	0.0	39.078945	3
TACGGGT	70	0.0	38.571426	4
TAAGGGA	805	0.0	38.291927	4
GTAACGG	100	0.0	38.250004	2
ACTCTCG	30	1.1397469E-4	37.499996	44
CGACAGT	30	1.1397469E-4	37.499996	2
CGTTATG	30	1.1397469E-4	37.499996	1
CCGTAAG	30	1.1397469E-4	37.499996	1
GCTTACG	30	1.1397469E-4	37.499996	1